Cutaneotrichosporon cavernicola: CcaHIS019_0407650
Help
Entry
CcaHIS019_0407650 CDS
T09540
Symbol
CcaverHIS019_0407650
Name
(RefSeq) uncharacterized protein
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CcaHIS019_0407650 (CcaverHIS019_0407650)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccac03019
]
CcaHIS019_0407650 (CcaverHIS019_0407650)
03032 DNA replication proteins [BR:
ccac03032
]
CcaHIS019_0407650 (CcaverHIS019_0407650)
Messenger RNA biogenesis [BR:
ccac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
CcaHIS019_0407650 (CcaverHIS019_0407650)
mRNA cycle factors
Common to processing body (P body) and stress granule
CcaHIS019_0407650 (CcaverHIS019_0407650)
DNA replication proteins [BR:
ccac03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
CcaHIS019_0407650 (CcaverHIS019_0407650)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIN_4
EST1_DNA_bind
Motif
Other DBs
NCBI-GeneID:
85495815
NCBI-ProteinID:
XP_060457210
UniProt:
A0AA48L4T9
LinkDB
All DBs
Position
4:complement(join(1979233..1982533,1982567..1982841))
Genome browser
AA seq
1191 aa
AA seq
DB search
MEPRARMTASPQPIDPALYRPVAPPSRITRGYSETDEITNRIVALQRQQAPPPTQRVRQG
STSSQRNTHTHRREPPPPPLPPPPHHSSSSSRPRTRDDGRRQKVNDFDRGLVAHTSRQLY
DPSKSHVIPRSPVRPYREVSTTAPPPIPVSSPKQSHKERRDIVSSSRRALFDPDAPSIPT
APRRPAADDARAVRHHDDPGPSTHKLFDPAVHDPVTFNAPIVPPPPVPQDTLSVPERPSI
LRRTSAKVRSPEEEADLARERERRRRHRSEQGSVHTSQRKESDTRSRGSSGSQGSASLKD
RERGQGQVDSGAKELLRSAYKEIGALEQTLIDMHRKMQKDPEAGITVLMDNPKATQANGA
SNESMAWAELISMHKELANLHSNFLKLALDPKSPRDLRPLPGRHNIPVRLWQTGYLAILE
RLRFAWISQKSVIALDLLTDFIYDAYHSYAELFGDNGMAAFRAAWIEALGDLARYRMAVA
ARESEAPRPKRSTDARIDDDDDEPLLETASIGQEVADNWTVSDKETWRTMARDWYAMGIS
EKPGEGRLHNHLALLCRDMRGQEPRALYHFAKSLAASHPFKASREAVLTLFDSAAQFQRS
TPEATAMDLFVRLHGMLFTRIELDDFEHVMSRFMERLEEDASLDGVSRKACVTQVDWLFM
GVVNIVAMLQYGSEDGIIRKGWAQESAARRRQAGVVEENGEVDDEGLDNDDDGQGQQPQT
PPISRPDSPAPPSFTNALHLTFAILEFTFARPFRQQGLHQVLNPYISIMFTFLATIFRNP
VAGAALTTYVPWRGLVEIVNSLRLEVSEETRLVNGVPLPEDWVIRGMEWVGRRVFERGFW
KTKSNSRSSNGGPAIPRVGERFNSEMDVLLANFDAAIDITEGVVDEVDGADLTDGPVAVN
DRRRRRVAWAAGTLVSNVDGLELEDGKVVIRGFLAAAIDAEEARKTREREEEEARETARR
ARQPQSAASEEDIQSEDEDEDPDLAILRDRRRHLRDILQVPTARSKAPRSRLTRSTHNVV
PGYTILVFDTNVLLSALGHFSKVVEGGQWSVVVPLPVVTELDGLSKSPPPLGTEAAAAVA
YLEARIRTHALCLKVQTSRGNYLTDLLIRAETLDLHSRDTARTMDDMILNVAAFQRNHFV
DRSGLLGQARPVEGAPTQVLLVTFDRNLRLKARALGIDAADEREMAAILAK
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggaaccccgagctcgtatgacggcgagcccacagcctatcgatcctgcgctctatcgc
ccggtggcgccaccatcccgcatcaccaggggctacagcgagaccgacgagatcacgaac
aggatcgtcgcactccagcgccagcaagccccgccacccacccagcgcgtgcgccaaggc
tcgactagcagccaacgcaacacacatacccaccggcgtgagccgccgccgccaccacta
cctccaccaccacaccacagctcgtcctcatcgagaccccgcacgcgtgacgatggacgc
cgacagaaggtaaacgactttgaccgcgggcttgtggcgcacacatcgcgccagctgtac
gatccgtccaaatcccacgtaataccccgctctcccgtccggccctaccgcgaagtctcg
accaccgcaccgccaccgatccctgtatcgtcccccaagcaatcccacaaagaacggcgc
gatattgtgtcctcgtctcggagggctctcttcgaccccgatgccccttcaatcccaact
gcacccaggcgaccagcagccgatgacgcccgcgcagtccgccaccacgatgacccaggt
ccatcgacgcacaagctgttcgatcctgctgtccatgaccccgtgaccttcaacgcaccc
attgtaccaccgccacccgtgccgcaggacacgctctcggtaccagagcgcccctcaata
ttgcgtcgcacttcggcaaaggtgcgctcgccggaggaggaggccgacctcgcgcgtgag
cgtgagcgtcgtcgccgccatcgcagcgaacaaggcagcgttcacacgagccagcgcaag
gagtcggacacgcgcagtcgaggaagcagcgggagccagggaagcgccagcttgaaggac
cgcgagcgcggtcaggggcaagttgactctggcgccaaggaacttctgagaagcgcctac
aaagagatcggcgcattggagcagacgctcatcgacatgcatcgaaagatgcagaaggat
ccagaagctggcattaccgtgttaatggacaacccgaaggcgacacaggccaacggcgcg
tccaacgagagcatggcgtgggcggagctcatctccatgcacaaggagctcgccaacctg
cactccaacttcctcaagctcgctcttgaccccaagtcgccacgtgacttacggccgtta
ccaggcaggcacaacatccctgtccggctatggcaaactggttatcttgccattctcgag
agactgcggtttgcgtggatatcgcagaagagtgttattgccctcgacctcctcaccgac
ttcatctacgacgcgtaccactcgtatgcagagctattcggggacaatggtatggccgcg
ttccgcgccgcatggattgaggcacttggcgacctcgcacgctaccgaatggcagtggcc
gcgagggaatcagaggcgccgaggcctaagcgctcgacagacgcacgcatcgacgacgac
gacgatgagcctctgctcgaaaccgccagcatcggtcaggaggttgccgacaactggacc
gtttcagataaggaaacatggagaacgatggcgcgcgactggtacgccatgggcatctcc
gagaagcccggtgaggggcggctgcacaaccaccttgctctcctgtgccgtgacatgcgc
ggacaggagcctcgcgcgctgtaccactttgccaagagccttgcagcgtcacaccctttc
aaggcgtcccgtgaagctgtgttaacgctcttcgactcggctgcccagttccaacgatcg
acgcctgaggcgacggccatggacctattcgtccgcctgcacggcatgctgttcacgcgc
atcgagctcgacgattttgagcacgtcatgagccgattcatggagcgactcgaggaggac
gctagcctcgacggcgtgagccgcaaggcgtgcgtcacgcaggtcgactggctgtttatg
ggcgttgtcaacattgtcgccatgctgcagtacggctcggaggacggcatcatccgcaaa
ggatgggcgcaggagagcgctgcgcgccgccgccaggccggtgtggtggaggagaacggt
gaggttgacgacgagggattggataacgacgatgacggccaaggccagcaaccccagacg
ccgcccatctcccgtcccgactcgcccgccccgccgagtttcaccaacgcgctgcacctc
acgtttgccatcctcgagttcacgttcgcccgtcccttccgccagcagggactgcaccag
gtgctcaacccgtacatctccatcatgttcacattcttggcgaccatattccgcaaccct
gtggctggagcggcgttaacgacctacgtgccttggcgcggcctggtcgagattgtcaac
tctcttcggctagaagtatccgaagagactcgtctggtgaacggcgtcccgttgcccgag
gactgggtgatccgtggcatggagtgggtcggtcgacgcgtatttgaacgtggattctgg
aagaccaaatcgaactctcgcagctcgaacggtggcccagctattccgcgcgtgggcgag
cgcttcaacagcgagatggatgttctgctggcgaactttgacgcggcgatcgacattacc
gagggcgtcgtcgatgaggtcgatggcgcagacctaacggacgggcccgttgctgttaac
gaccgccgccgccgtcgtgttgcatgggcggccggtaccttggtgtccaacgtggacggg
ctcgagctcgaggacggcaaggtcgtcattcgtggtttccttgcggcagccatcgacgcc
gaggaggcgcgtaagactcgtgagcgcgaggaggaggaggctcgcgagacggcgcggcgt
gcgcgccagccccagtcggcggcctcggaagaggacatccagtccgaggacgaggacgag
gacccagacctcgcgatcctgcgcgaccgccgccgccaccttcgcgacatcttgcaggtg
ccgacggcacgctccaaagccccacgctcacgactcactcggagcacgcacaacgtcgtt
ccggggtatacgatcctggttttcgacaccaacgtgctcctttcggcgctcggccacttc
tccaaggttgtcgaaggcggtcagtggtcggtcgtagtaccgcttccagtggtgaccgag
ctggacgggctctcaaagagcccccctcctctgggcaccgaggcggccgcggccgtcgct
tacctcgaggcgcggatccggacgcacgcgctttgcctcaaggtccagacgtcgcgcggc
aactatctgacggacctgctcatcagggccgagacgctcgacctgcattcgcgtgacacg
gcgcgcacaatggacgacatgatcctcaacgtcgctgccttccagcgcaaccactttgtc
gaccgtagcggtcttctgggccaggcgcggccggtggaaggcgcgccgacccaagtcttg
ctcgtcacctttgaccgtaatctgcgcctcaaggcgcgcgcgcttggcattgacgcggcc
gacgagcgcgagatggccgcaatattggccaagtag
DBGET
integrated database retrieval system
