Cervus canadensis (wapiti): 122423755
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Entry
122423755 CDS
T07554
Symbol
APOBEC3B
Name
(RefSeq) DNA dC->dU-editing enzyme APOBEC-3B isoform X1
KO
K18750
C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03250
Viral life cycle - HIV-1
ccad05170
Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
122423755 (APOBEC3B)
09160 Human Diseases
09172 Infectious disease: viral
05170 Human immunodeficiency virus 1 infection
122423755 (APOBEC3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccad03019
]
122423755 (APOBEC3B)
Messenger RNA biogenesis [BR:
ccad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122423755 (APOBEC3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
APOBEC2
NAD2
NAD1
APOBEC_N
APOBEC3
SNAD4
APOBEC_C
APOBEC4_like
APOBEC4
APOBEC1
dCMP_cyt_deam_1
MafB19-deam
AID
Toxin-deaminase
DUF7136
Motif
Other DBs
NCBI-GeneID:
122423755
NCBI-ProteinID:
XP_043297040
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All DBs
Position
21:complement(9039874..9054303)
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AA seq
414 aa
AA seq
DB search
MEPPHSRQSPGLQSAYRGYNQMPWIRNHVWRLDPDTFYFQFHNLLYANGRNCSYICYRVE
RRKHRSYVAFDWGVFHNQVNAGTRCHTELHFLTWFCKMKLHPDECYHITWYMSWSPCVKC
AKQVANFLARYRNVKLSIFAARLYYFQDMAYRQGLLGLSQQGARVDIMSYREFKYCWKKF
VDSQRRRFKPWKKLDINYQRLVAELDDILGTVGPAHPSEAELCQEGGPQRRNTMNLLRET
LFKHQFGNQPRVPPPHYRRKTYLCYQLKQRDDSTLDRGCFRNKKQRHAEIRFIDKINSLN
LDPRQSYKIICYITWSPCPQCASELVNFIKGKDHLNLQIFASRLYFHWKKPFQKGLQQLQ
AAGISVAVMTHTEFEDCWEQFVDNQSRPFQPWEKLQQYSASITRRLQRILMAPT
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggagcccccgcactcaagacaaagtccagggctacaatcagcctaccggggctacaac
cagatgccctggatcaggaaccacgtgtggaggttagatcctgataccttttacttccag
tttcacaacctgctctacgccaatgggcggaactgctcctacatctgctaccgggtggaa
agaaggaaacaccgctcatatgttgccttcgactggggggtctttcataaccaggtcaat
gctgggactcgctgccacaccgaactccactttctgacttggttctgcaaaatgaagctg
caccctgacgagtgttaccacatcacctggtacatgtcgtggagcccctgcgtgaagtgc
gcgaagcaggtggctaacttcctggcgaggtaccggaatgtgaagctcagcatcttcgcg
gcccgcctctactacttccaagacatggcgtacaggcaggggctgcttgggctgagccag
cagggggccagggtggacattatgtcctaccgagaattcaaatactgttggaaaaagttt
gtagacagtcagaggaggcgcttcaagccttggaagaaactggacataaattatcagcgg
ctggttgcagagctcgacgacattctcggtactgtcggtcctgcccatccatcagaggct
gagctctgccaagagggagggccccagagaagaaacacaatgaatctgctaagagaaact
ctgttcaagcatcagtttggcaaccagccccgggtcccaccacctcactaccggaggaaa
acctacctgtgttaccagctgaagcagcgtgacgactcaacgcttgacagaggctgcttc
cgaaacaagaagcagcggcatgcagaaattcgctttattgacaagatcaactcactgaat
ctggacccgaggcagagctacaaaatcatctgctatatcacatggagcccttgcccgcaa
tgtgccagtgagctggtcaatttcatcaagggaaaagaccacctgaacctgcagatcttt
gcctcccgcctgtactttcactggaaaaagccattccagaaggggctgcagcaactgcag
gcagccgggatctcagtggctgtcatgacccacacagagtttgaagactgctgggaacag
tttgtggacaaccagtcaaggcccttccagccctgggagaagctgcagcaatacagtgcg
agcataacacgaaggctccagaggatcctgatggccccaacttag
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