Cervus canadensis (wapiti): 122423797
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Entry
122423797 CDS
T07554
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
122423797 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccad03000
]
122423797 (KDM2B)
04121 Ubiquitin system [BR:
ccad04121
]
122423797 (KDM2B)
03036 Chromosome and associated proteins [BR:
ccad03036
]
122423797 (KDM2B)
Enzymes [BR:
ccad01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
122423797 (KDM2B)
Transcription factors [BR:
ccad03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
122423797 (KDM2B)
Ubiquitin system [BR:
ccad04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122423797 (KDM2B)
Chromosome and associated proteins [BR:
ccad03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
122423797 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
122423797 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
Motif
Other DBs
NCBI-GeneID:
122423797
NCBI-ProteinID:
XP_043297127
LinkDB
All DBs
Position
1:complement(124495330..124610442)
Genome browser
AA seq
1357 aa
AA seq
DB search
MPPAPGSGFPALPPRPPGLLLPPSRALRRLLPGPTNAPPARARSPPRGLHNQAPGRRPID
RQRYDENEDLSDVEEIVSARGFSLEEKLRSQLYQGDFVHAMEGKDFNYEYVQREALRVPL
VFREKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEMSMSQFVRYYETPEAQ
RDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQTEATNAIAEMKYPKV
KKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNLALYEEWVLSGKQSDI
FLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIED
RTRVQPKFRYPFYYEMCWYVLERYVYCMTQRSYLTQEYQRESMLIDAPRKPSIDGFSSDS
WLEMEEESCEQQPQEEKEEEEEEEEEEEGADKTPKASADGPASPTSTPSEDQEAPGKKPK
APAMRFLKRTLSNESEDSVKSATMPTDYPKTPTGSPATEVSAKWTHLTEFELKGLKALVE
KLESLPENKKCVPEGIEDPQALLEGVKNVLKEHAEDDPSLAITGVPVVTWPKKTPKNRAV
GRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRM
KQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSICNEIIHPGCLKI
KESEGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLLKEQKMNRDNKE
GQEPAKRRSECEEAPRRRPDEHPKKVPPDGILRRKSDDVHLRRKRKYEKPQELSGRKRAS
TLQTSPGSSSHLSPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKLFRKKRRSWKNSEDRI
TLANKPLRRFKQEPEEDLPEAPPKTRESDHSRSSSPTAGPSTEGAEGPEEKKKVKMRRKR
RLPNKELSKELSKELNQEIQKTESSLAQENHQPIKSEPESENEEPKRPLGLCERPHRFSK
GLNGTPRELRHQLGPGLRSPPRVISRPPPSVSPPKCIQMERHVIRPPPISPPPDSLPLDD
GAAHVMHREVWMAVFSYLSHQDLCVCMRVCKTWNRWCCDKRLWTRIDLNHCKSITPLMLS
GIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWIAVSALCSSSCPLLRTLD
VQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDITDASLRLIIRHMPL
LSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSFFKRCGNICHID
LRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgccgccggcccccggttccggcttcccggctctgccgccgcggccgccagggctgctg
ttaccgccgagccgggcgctgcggcggctcctcccggggcctacaaatgccccgccagcc
cgtgcgcggagcccccctcgcgggttacataaccaggctcccggtcgacgcccgattgac
cgccagagatacgacgagaacgaggacttgtcggacgtggaggagatcgtcagcgcccgc
ggcttcagcctggaggaaaagctgcgcagccagctgtaccagggggatttcgtgcacgcc
atggagggcaaagatttcaactatgagtatgtgcagagagaagctctcagagttcccctg
gtatttcgagaaaaggatggcctgggaattaagatgcctgaccctgatttcacagtccga
gatgtcaaactcctagtgggtagccggcggctggtggacgtgatggacgtgaacacccag
aaaggcacggagatgagcatgtcccagtttgtgcggtactacgagacgcccgaggcccag
cgggacaagctgtacaacgtcatcagccttgagttcagccacaccaaactggagcacctg
gtcaagcggcccaccgtggtagacctggtggactgggtggacaacatgtggcctcagcac
ttgaaggagaagcagacggaagccacgaatgccattgcagagatgaagtacccgaaagtg
aagaagtactgtctgatgagcgtgaagggttgtttcactgacttccacatcgactttgga
ggcacttccgtttggtaccatgttttccggggtgggaagatcttttggctgattcctcca
accttgcacaatttggcactgtatgaggagtgggtgctgtcaggcaaacagagcgacatc
ttcctgggagaccgtgtggagcgatgccaaagaattgagctgaaacagggctacacgttt
ttcatcccttccggctggatccatgcagtctacactcctgtagactctctggtgttcggc
gggaacatcctgcacagtttcaacgtgcccatgcagctgcggatctacgagatcgaggac
agaacgcgggtgcagcccaaattccgttaccccttctactatgagatgtgctggtatgtc
ttggagagatacgtgtactgtatgacccagcggtcctacctcactcaggaataccagaga
gaatcaatgcttattgatgccccaagaaagcccagcatagacggcttctcatctgattcc
tggctggagatggaggaggagtcctgtgagcagcagccccaggaggagaaggaggaagag
gaggaagaggaggaagaggaggagggtgcagataagacccccaaagcatctgctgatggc
cctgcctcacccaccagcaccccgtccgaggaccaggaggcccccgggaagaagcccaaa
gcccctgccatgcggttcctcaaaaggactctgtcgaacgagtcagaggacagcgtgaag
tctgccacgatgcccaccgactaccccaagacgcccactggctctcccgccactgaggtc
tctgccaaatggacccacctcaccgagtttgaactgaagggcctgaaagctctggtggag
aaacttgaatccctcccggagaacaagaagtgtgtccccgagggcatcgaggacccccag
gccctccttgagggtgtgaagaatgtcctgaaggagcacgcggaggacgaccccagtctg
gccatcactggggtccccgtagtcacttggccaaagaagactccaaagaaccgggcggta
ggtcggcccaaggggaagctgggcccggcctccgcggtgaagttggccgccaaccggacc
acggcgggagctcgccggcgccggacgagatgccgcaagtgcgaggcctgcctgcggacg
gagtgcggcgagtgccatttctgcaaggacatgaagaagttcgggggccccgggcggatg
aagcagagctgcatcatgcggcagtgcatcgcgccagtgctgccccataccgccgtgtgc
ctggtgtgtggcgaggcgggaaaagaggatacagtggaagaggaagaaggcaagtttaac
ctcatgctcatggaatgctccatctgcaatgaaatcatccaccctggatgccttaagatt
aaggagtcagagggcgtggtcaacgatgagcttccaaactgctgggagtgtcccaagtgt
aaccacgccggcaagaccgggaaagcctacaagcaaaagcgtggccctggctttaagtac
gcctccaacctgcccggctccctgctcaaggagcagaagatgaaccgggacaacaaggaa
gggcaggagcctgccaagcggaggagtgagtgtgaggaggcgccccggcgcaggcccgac
gagcaccccaagaaggtgccccccgacggcatcctgcgccgaaagtcggacgacgtgcac
ctgaggaggaagcggaaatacgagaagccccaggagctgagtggacgcaagcgagcctcg
acgcttcaaacatcccccggttcctcctctcacctctcgccgaggccccctctaggcagc
agcctcagcccctggtggagatccagtctcacttacttccagcagcagctaaaacctggc
aaagaagataagcttttcaggaaaaagcggcggtcctggaagaactccgaggaccggata
actctggccaacaagcctctccggcggttcaagcaggaaccagaggaggacctgcccgag
gcgccccccaagaccagggagagcgaccactcgcgctccagctcccccaccgccgggcca
agcactgagggcgcagaggggcccgaggagaagaagaaggtgaagatgcggcggaagcgg
cggctccccaacaaggagctgagcaaggagctgagcaaggagctgaaccaggagatccag
aagacggagagcagcctggcccaggagaaccaccagcccatcaagtcggagcctgagagc
gagaacgaggagcccaagcggcccctgggcctctgtgagcgcccccaccgcttcagcaag
gggctcaacggcaccccccgggagctgcggcaccagctggggcccggcctgcgcagcccg
ccccgagtcatctcccggccccctccctccgtgtccccgcccaagtgcatccagatggag
cgacatgtgatccggccgccccccatcagccccccgcccgactcgctgcccctggatgac
ggggcggcccacgtcatgcacagggaggtgtggatggccgtcttcagctacctcagccac
caagacctgtgtgtctgcatgcgggtctgcaagacctggaaccgctggtgctgcgataag
cggttatggacccgcatcgacttgaaccactgcaagtccatcacgcccctgatgctaagc
ggcatcatccggcgacagcctgtctccctggacctcagctggaccaatatctccaagaaa
cagctgagctggctcatcaaccggttgcctgggctccgagacttggtgctgtctggctgc
tcatggatcgcagtctccgccctctgtagctccagctgtccgctgctccggaccctggat
gtccagtgggtagaaggactgaaggacgcccagatgcgggacctcctatccccgcctaca
gataacaggccaggtcagatggacaatcggagtaagctccggaacattgtggagctgcgt
ctggccggcctggacatcacggacgcctccctgcggcttatcatccgccacatgcccctg
ctctccaagctccacctcagttactgtaaccatgtcactgaccagtccatcaacctgctc
actgctgtgggcaccaccacccgggactccttaaccgaaatcaacctgtcagactgcaat
aaggtgactgaccagtgcctgtccttcttcaaacgctgtgggaatatctgtcacattgac
ctgaggtactgcaagcaagttaccaaggaaggctgcgagcagttcatagctgaaatgtct
gttagtgtccagttcggacaagtggaagaaaaactcctgcaaaaactgagttag
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integrated database retrieval system
