Cyanistes caeruleus (blue tit): 111931674 Help Entry 111931674         CDS       T05602                                  Name (RefSeq) protocadherin-15 isoform X1   KO K16500   protocadherin-15 Organism ccae  Cyanistes caeruleus (blue tit) Brite KEGG Orthology (KO) [BR:ccae00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    03037 Cilium and associated proteins [BR:ccae03037]     111931674    04515 Cell adhesion molecules [BR:ccae04515]     111931674 Cilium and associated proteins [BR:ccae03037]  Primary cilia and associated proteins   USH complex and associated proteins    111931674 Cell adhesion molecules [BR:ccae04515]  Cadherins   Protocadherins    111931674 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Cadherin ECD Cadherin_FAT4_N Cadherin_CELSR2_9th RET_CLD1 Fibulin_C Cadherin_2 PCDH15_12th Motif Other DBs NCBI-GeneID:  111931674 NCBI-ProteinID:  XP_023786155 LinkDB All DBs Position 6 AA seq 1274 aa AA seqDB search MVQQLCLWKWFTVGMALAAVLAWALAQNDEDWQYEDCKLARTGPPATIVPIDEESRNGTI LVDNMLIKGTAGGPDPTIELSLKDNVDYWVILDPIKQTLYLNSTGRVLDRDPPVSIQSIV VQVQCVNKKVGTVINHEVRIVVRDRNDNSPQFQQQRYYVAVNELTPVGTTIFTGFSGNNG AIDIDDGPNGQIEYVIQYNPNDKTSNRTFDIPLTLSGAVVLRERLNYEEKTRYFVIVQAN DRAQNLNERRTSTTTLTVDVLDGDDLGPMFLPCVLVNNTRDCRPLTYQASLPELTDPTRV NPISVTPPIQAIDQDRNIQPPSERPGILYSILVGTPEDYPQYFHMNLTTAELTLLKPVNR DLHQKFDLVIKAEQDNGHPLPAFANLHIEILDENNQKPYFTRSTYEGFILESSPVGTTIS DNRNLTSPLQVVVLDNDVEETKDPQVHLFLNDYTTFFTVTQSGITRYLTLLQPVDREVQQ LYTFSMTASDGVQESVPVTVNIVVIDANDNTPTFSNISYSVKIYTDMRPGEGVIKLTAVD ADEGANGRIVYEILAGDQGDFTINEHTGLITIAPGVVLAVGRSYALTVRASDSAPPAQRR SSITTVYIEVLPPNNQSPPRFPQQMYSLEVSEAMRIGAVLLNLQAFDREGDPIKYLIQNG DPQQVFNLSQSSGLLALGKALDRESTDRYILIVTASDGRPDGTSTATVNIVVTDVNDNGP VFDMFLPKNLSVQEEEANAFVGQVRATDADAGVNGQVHYSLANFNNLFRITSNGSIYTAV KLNREVRDYYELIVEATDGAVDPRRSTLTLAIKVLDIDDNSPVFTNASYTVCVPENLPPG TVFLQLEAKDVDLGADVNYRIRTEEAQEYFALDKHTGELSLRKSLDYESFSDTEAIFTFL VEAFDSKGTMPPGLATVTVRVKDMNDYSPVFSQKLYRGMVAPDAAKGTVITTVSAEDEDP PGTPASWVRYKVDVVQFPYSASIFDVEETSGRVVTRVNLNEEPSTVFKLVVIAYDDGDPV KFNTTMVEIVVLQPSVIPRFTQDEYRPPPVSESAPKGTVVTVVTAAALNQTVVYSIVSGN EEDVFAINNRTGVISVKKPLDYESVQSYELRVQADSLQVVRSNLRVPSKSNTAKVFIEVK DENDHAPVFTKKMYIGGVSEDARMFSSVLKVKADDKDTGNYSAMQYRLIIPPIKDGKEGF VIEAYTGLIKTAMLFKNMRRSYFKFQVIATDDYGKGLSSKAEVLVSVVNQLDMQVIVSNV PPTLVEQNKDQLIG NT seq 3825 nt NT seq  +upstreamnt  +downstreamnt atggtccagcagctttgtctctggaaatggttcacagtggggatggcacttgctgctgtc ctggcatgggctctggcccagaatgatgaagactggcaatatgaggattgcaagttggcc agaacaggtcctccagccacaatagttcccattgacgaggagagtcgcaacggcactatc ctggttgacaacatgctgatcaaagggacagcaggagggcctgaccccaccatcgagctc tccctgaaggacaatgtggattactgggtgatcctggaccccatcaagcagaccttgtac ctgaacagcaccggccgtgtgctggacagagatccaccagtgtccatccagtccatcgtg gtgcaggtgcagtgtgtgaacaagaaggtcggcaccgtcatcaaccacgaggttcggatc gtggtgcgggaccgcaacgacaactccccgcagttccagcagcagcgctactacgtggcc gtcaacgagttaactccagttggaacaaccatcttcacaggattttctggaaacaatggt gctattgacattgatgatggtcccaatggccagatagaatatgtcatccagtataatcct aatgacaagacttccaacaggacctttgatattcctctcactttgtctggagcagtagtt ctgagggaaagactaaattatgaagaaaagactcgttactttgtcattgttcaagccaat gaccgagcccaaaacctgaacgagcgaaggacgagcacgaccaccctgactgtggatgtg ctcgatggggacgatttgggacccatgttcctcccctgtgtgctggtgaacaacacccgg gactgcagacccctcacctaccaagccagcctgccagagctgacagatcctacccgtgtg aatcccatcagtgtcactccacccatccaagccatagatcaggaccgaaacatccagcct ccttctgaacgacctggcatcctctattccatcctagttggtactcctgaggattatccc cagtatttccatatgaatctcacaacggctgaactgactctcctcaagccagtaaacagg gatttacaccagaagtttgacttggttattaaggctgaacaagacaatggccatcctctc cctgcctttgccaatctccacatcgagatcctggatgagaacaaccagaagccttatttc acaaggtctacctatgagggcttcatcctggaatcctctccagtgggaacgaccatctca gataaccggaacctgacctcccccctgcaggtcgtggtgctggacaacgacgtggaagag accaaggatccgcaggtccatctcttcctgaacgactacaccacgtttttcactgtgact cagagtggcatcacccgctacctcaccctgctgcagcctgtggacagggaggtccagcag ctctacacattctctatgacagcttctgatggagtccaggagagtgtcccagtgactgtc aacatcgtggtgattgatgcaaatgataacaccccgaccttctccaacatttcctacagt gtcaagatctatacggatatgaggcctggggaaggtgttataaagctgacggccgtggac gcggacgagggagccaatgggcggatagtgtatgaaatcctggccggggatcagggagac ttcaccatcaatgagcacacaggcctgatcaccatcgctccaggagtggtgctggcagtg gggcgctcctacgccctcacggtcagagcgtctgacagtgccccccctgcacagagaagg agctctatcaccactgtttacatcgaggtgctgcctcccaacaaccagagccctccacgc ttcccacagcagatgtacagcctggaggtcagcgaggccatgaggatcggtgctgttctg ttaaacctgcaggctttcgacagagagggagaccccatcaaatacctcattcagaatgga gatcctcaacaagtttttaatctctctcaaagctctggcctgctggccttgggaaaggcc ctggacagagagagcactgaccgctacatcctcatcgtcacagcctcggacggcagacct gacgggacatcgactgctactgtcaatatagtggtgacagatgtcaatgacaacggacca gtttttgacatgtttctccccaaaaacctctctgtgcaggaagaggaagccaatgctttt gttggtcaagtaagggctacagatgcagatgctggggtcaatgggcaagtccattacagc ctggcaaatttcaacaaccttttccggatcacctccaacggcagcatttacacagcagtg aaactgaacagggaggtgagggattactacgagctcatcgtggaggcgacagacggagct gtggacccccggcgctccacgctcaccttggccatcaaggtgctggatattgatgacaac agccctgtgtttaccaatgcctcctacactgtctgcgtgccagaaaatctcccaccagga actgtcttcctgcagctggaggccaaagacgtggacctgggtgctgatgtgaactatagg atccgcactgaggaagcccaggagtattttgccctggacaagcacacaggagagctgtcg ctgcggaagtccttggattatgagtccttctctgacacagaagcaatcttcaccttcctc gtggaagccttcgacagcaagggcacgatgcctcctgggctggccactgtcaccgtcaga gtcaaggatatgaacgattactcgccagtgttcagccagaagctctacaggggaatggtt gctcctgacgcagccaagggcactgttatcaccacggtctcagctgaggatgaggatccc ccgggcaccccagcaagttgggtccgctacaaggtggatgttgtccagtttccctacagt gccagtatttttgatgtggaggaaacctctggacgtgtcgtcacccgagtgaacctcaat gaagagcccagcacagtgttcaagctggtggtcattgcctacgatgatggggacccagtg aagttcaacaccaccatggtggaaattgtggtgctgcagccctcagtcattccacgcttc acacaggatgaatacagacctcccccagtgagtgaaagtgccccgaagggaaccgtggtc accgttgtcaccgcagccgccctgaaccagacagtcgtgtactccattgtgtcagggaat gaagaggatgtgtttgccattaacaacagaacaggagtgatctctgtgaaaaagcctctg gactatgaaagtgtccaaagttacgagctccgagtgcaggcagactcactgcaggtggtg agatccaacctgcgggtgccctccaaaagtaatacagccaaggtctttattgaagtgaag gatgaaaatgaccatgcacctgtttttaccaaaaagatgtacattggaggggtgtctgaa gatgccagaatgttttcttctgtgcttaaagtgaaggctgatgataaggacactgggaat tacagtgccatgcaatacaggctcatcattccccccatcaaggatggcaaggaaggcttt gtgatcgaggcttacacggggctgatcaaaactgccatgctcttcaaaaacatgaggaga tcctatttcaagttccaggtcattgccactgacgattacggcaaaggactgagcagcaaa gcagaagtgctcgtctctgtggtcaatcagctggacatgcaagtgattgtctccaacgtc cctcccaccctcgtggagcaaaacaaagaccaactcattgggtaa

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