Clavibacter californiensis: FGD68_09395
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Entry
FGD68_09395 CDS
T08592
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccaf
Clavibacter californiensis
Pathway
ccaf03030
DNA replication
ccaf03410
Base excision repair
ccaf03420
Nucleotide excision repair
ccaf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FGD68_09395 (ligA)
03410 Base excision repair
FGD68_09395 (ligA)
03420 Nucleotide excision repair
FGD68_09395 (ligA)
03430 Mismatch repair
FGD68_09395 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccaf03032
]
FGD68_09395 (ligA)
03400 DNA repair and recombination proteins [BR:
ccaf03400
]
FGD68_09395 (ligA)
Enzymes [BR:
ccaf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FGD68_09395 (ligA)
DNA replication proteins [BR:
ccaf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FGD68_09395 (ligA)
DNA repair and recombination proteins [BR:
ccaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FGD68_09395 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FGD68_09395 (ligA)
MMR (mismatch excision repair)
DNA ligase
FGD68_09395 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FGD68_09395 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
Nlig-Ia
HHH
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
UKF79020
LinkDB
All DBs
Position
1928531..1931107
Genome browser
AA seq
858 aa
AA seq
DB search
MSDTTTGSDRAADPVPATTPAELDAASARVDALRTEIERHRDAYYASNASTVADAEYDAL
VHELEALEEAHPTLRSQDSPTQTVGGRAETTLFAPVTHAERMLSLDNVFSEEELAEWAAK
VERDAGSGRVRYLSELKIDGLAINLRYEHGVLVTAATRGDGVVGEDVTQNVLTMGTVPER
LAGSGHPPLVEVRGEIFFPVAEFDELNARQLEVGERVFANPRNAAAGSLRQKEEGKSPAR
LELMRARIRRLRMLVHGIGAWPVHELERDAHVSAQSEVYGLLAGWGLPISTHFRVFDDIA
EVTEFVRRHGAHRAEVEHQIDGIVVKVDDLGLHEELGATSRAPRWATAYKYPPEEVNTKL
LDIVVSVGRTGRATPFAVMEKVEVAGSEVRQATLHNQQVVKAKGVLIGDTVVLRKAGDVI
PEVLGPVVELRDGSEREFVMPTLCPECQTPLRPAKEGDIDLRCPNARSCPAQVRGRVEHV
ASRGALDIEGLGEVAAAALTQPLEPEDPPLETEAGLFELTMADLVPITVVVRDAETGMVK
ADERTGEAKRVTPFRRKRAPKRDGAFDPAAPWGDEDSVPSKSAEVLLENLDKAKTQDLWR
ILVALSIRHVGPVAARALAGWFGSLDAIRSASREELAAVDGVGGIIADALLDWFEVDWHR
EIVDRWEKAGVVTAVPGHPGPGAAAAAGGVLAGLTVVATGSLEGYTREGALEAIMAAGGK
AGSSVSKKTHYVAAGPGAGSKLGKAEALGVRIIDAAEFRLLVEQGPDAIALPGADPVADA
EPAADAAGAPAVGEGDEVATAEAKPKRARKRKAPAAADVASPADIATPADMDADAAADPA
STDPEPADHQPEGAAETP
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacgacgaccggatccgaccgggccgcagaccccgtccccgccaccaccccc
gccgagctcgacgcggcctccgcccgggtggatgcgctccgcaccgagatcgagcgccat
cgcgacgcctactacgcgtcgaacgcgagcacggtcgccgacgccgagtacgacgcgctc
gtgcacgagctcgaggccctggaggaggcgcaccccacgctccgcagccaggacagcccc
acgcagacggtcggcggccgcgccgagaccacgctcttcgcgcccgtcacgcacgccgag
cgcatgctcagcctcgacaacgtcttcagcgaggaggagctggccgagtgggccgccaag
gtcgagcgcgacgccggcagcggtcgcgtccgctacctctcggagctcaagatcgacggg
ctcgccatcaacctccgctacgagcacggcgtgctcgtgacggcggccacgcgcggcgac
ggcgtcgtcggcgaggacgtcacgcagaacgtcctcaccatgggcacggtccccgagcgg
ctcgccggatccggccacccgccgctcgtcgaggtgcgtggcgagatcttcttccccgtc
gcggagttcgacgagctcaacgcccggcagctggaggtgggggagcgcgtgttcgcgaac
ccccggaatgcggcggcgggatccctgcgccagaaggaggagggcaagagcccggcacgc
ctcgagctcatgcgcgcgcgcatccgccgcctgcgcatgctcgtgcacggcatcggcgcg
tggcccgtccacgagctcgagcgcgacgcgcacgtgtccgcgcagtcggaggtctacggg
ctgctggccggctggggcctccccatctccacgcacttccgcgtgttcgacgacatcgcc
gaggtgacggagttcgtgcggcggcacggcgcgcaccgcgccgaggtcgagcaccagatc
gacggcatcgtcgtcaaggtcgacgacctggggctccacgaggagctcggcgccacgagc
cgcgcgccgcgctgggcgaccgcgtacaagtacccgcccgaggaggtcaacacgaagctc
ctcgacatcgtcgtgagcgtcggccgcacgggtcgtgccacgcccttcgcggtcatggag
aaggtcgaggtcgccggatccgaggtgcgccaggccacgctgcacaaccagcaggtcgtc
aaggccaagggcgtgctcatcggcgacacggtcgtgctgcgcaaggccggcgacgtcatc
cccgaggtcctcggcccggtcgtcgagctgcgcgacggatccgagcgcgagttcgtcatg
cccacgctctgccccgaatgccagacgccgctgaggcccgccaaggagggcgacatcgac
ctccgctgcccgaacgcccgcagctgcccggcgcaggtgcgcggccgcgtcgagcacgtg
gcgtcgcgcggcgcgctcgacatcgagggcctgggcgaggtcgcggcggccgcgctgacg
cagccgctcgagccggaggatccgccgctcgagaccgaggccggcctgttcgagctcacg
atggccgacctcgtgcccatcaccgtggtcgtccgtgacgccgagacgggcatggtcaag
gccgacgagaggaccggcgaggcgaagcgcgtcacgccgttccggcgcaagcgcgccccg
aagcgggacggcgccttcgatccggccgcgccgtggggcgacgaggacagcgtgccctcg
aagtccgccgaggtgctgctcgagaacctcgacaaggcgaagacccaggacctgtggcgc
atcctcgtggccctcagcatccgccacgtcggcccggtcgccgcgcgcgcgctggccggc
tggttcggctctctcgacgccatccgctccgcgagccgcgaggagctggccgcggtcgac
ggcgtgggcggcatcatcgccgacgcgctgctcgactggttcgaggtcgattggcatcgc
gagatcgtcgaccgctgggagaaggcgggcgtcgtcacggctgtccccggccacccgggt
ccgggcgcggcggccgcggcgggcggcgtgctcgccgggctcacggtcgtggccaccggg
tcgctcgagggctacacgcgcgagggcgcgctcgaggcgatcatggcggcgggcggcaag
gccggatcgagtgtcagcaagaagacccactacgtcgcggccgggccgggcgcgggatcc
aagctcgggaaggcggaggcgctcggcgtgcggatcatcgacgcggccgagttccgcctg
ctcgtggagcaggggcccgacgccatcgcgctgccgggcgcggatccggtggccgatgcg
gaacccgcggccgacgcggccggggccccagcggtcggcgagggggacgaggtcgcgacc
gcggaggcgaagccgaagcgcgcccggaagcggaaggcgccggccgccgcggacgtcgcg
tcccccgcggacatcgcgacccccgcggacatggacgcggacgccgcagccgaccccgcg
tcgaccgaccccgaaccagccgatcaccagccggagggcgccgcagagaccccctga
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