Chromohalobacter canadensis: SR908_14960
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Entry
SR908_14960 CDS
T09637
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccag
Chromohalobacter canadensis
Pathway
ccag03030
DNA replication
ccag03410
Base excision repair
ccag03420
Nucleotide excision repair
ccag03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SR908_14960 (ligB)
03410 Base excision repair
SR908_14960 (ligB)
03420 Nucleotide excision repair
SR908_14960 (ligB)
03430 Mismatch repair
SR908_14960 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccag03032
]
SR908_14960 (ligB)
03400 DNA repair and recombination proteins [BR:
ccag03400
]
SR908_14960 (ligB)
Enzymes [BR:
ccag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SR908_14960 (ligB)
DNA replication proteins [BR:
ccag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SR908_14960 (ligB)
DNA repair and recombination proteins [BR:
ccag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SR908_14960 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SR908_14960 (ligB)
MMR (mismatch excision repair)
DNA ligase
SR908_14960 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SR908_14960 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
RNA_ligase
HHH_2
Nlig-Ia
HHH
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
WQH08753
LinkDB
All DBs
Position
complement(3217898..3219706)
Genome browser
AA seq
602 aa
AA seq
DB search
MPAFCRSFRVVLSLLLCSMPRLSGRRLLWGLVAYALVMGTPVSATTCPQQPPRTLQEDYQ
ALNAQLARWDQAYYHQGRRLVDDGTYDSAKRQLAHWAHCFPSLAASRIALHEPDGAQRHP
IPQTGVNKLPDRVAVARWITQQTSHPLWIQPKVDGVAVTLMYRQSRLVAAISRGDGIEGQ
DWLAKVSHIATIPLKLPDTAPTRVILQGELYARRDAHTQSHDGLDGARARVAGLMARDSL
TDRQGEEIGLFVWGWPDGPATMPARLATLVDWGFDEVADTTHAVTTPEDVARWREYWYNH
ALPFATDGIVVKRGDRPDGHEWEASPPDWAMAWKYPAQQAIAHVDALDFTVGRTGRITAV
ATLTPVMLGDKRITHVSLGSLAHWRKTNVRPGDQVRLRLAGLTIPQLQDVVIRTRPRPPV
ATPAADRYDRLSCLRLAPACREQFLARLEWLGSDNGLDFEGIGPATWRQLVDAGLIEELL
DWRTLDTRALKTLPGVGTKTAHDWRTLFATADKRSPRRWLRALGLPAIPQDALEAILARH
DMRELTQWTSSAWQGYSGIGETRAKQLGEFFHHPEIRRLLKSLQKEKIPREEGATETVNS
AR
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgccagccttctgtcgttctttccgcgtcgttttatcccttctactctgcagcatgccc
cgcctctcgggacgccggctcctgtggggcctcgttgcctatgctctcgtcatgggcact
ccggtatcggctacgacgtgccctcaacaaccacctcggacgctgcaagaagattaccag
gcgctcaatgcccaactcgcgcgttgggaccaggcctactatcaccaaggacggcgactg
gtcgacgatggcacctacgactccgccaagcgccaactggcccactgggcgcactgcttc
ccctccttggccgcctcgcgcatcgccttgcatgaacccgacggcgcgcaacgccacccg
atcccgcagacgggcgtgaacaagcttcccgaccgcgtcgccgtagcacgctggatcaca
cagcagacaagccatccactgtggatacaacccaaagtcgacggcgtcgccgtcaccctg
atgtaccggcaatcgcgcctggtcgcggcaatcagccgtggagacggcatcgaaggacaa
gactggcttgccaaggtatcgcacatcgcgacgatcccgttgaagcttcccgacacggcg
cccacacgcgtcattttacaaggcgagctctacgcacgccgcgacgcgcatacgcaatcc
cacgatggcctcgacggcgcacgcgcccgtgtcgccgggctaatggctcgcgattcactg
acggatcgccagggcgaggaaatcggcctattcgtctggggctggcccgatgggccagcc
accatgcccgctcgtcttgccacgcttgtcgactggggattcgacgaggtcgccgatacc
acgcacgcagtcaccacgccggaagacgtcgcccggtggcgcgaatactggtacaaccac
gccctgcccttcgccaccgacgggatcgtcgtcaagcgtggcgaccgtcccgacggacac
gagtgggaggcctcgcctcccgactgggccatggcctggaagtatcccgcccagcaggcg
atcgcacacgtcgacgcactcgacttcacagtgggccgcaccggccgcatcactgccgtt
gccacattgacgccggtcatgcttggcgacaagcgcatcacccacgtgagccttggctcg
ctggcgcattggcgcaaaacgaacgtgcgcccaggcgatcaagtcaggctgcgcctggcc
ggcctgaccatcccgcagctccaggacgtggtcatacgcacgcgaccgcgtccaccggtc
gcgacgcccgctgccgaccgttacgaccgcctgtcgtgtctacgcctggcaccggcgtgt
cgcgaacaattcctcgctcggctcgagtggctaggtagcgacaacggcttagactttgaa
ggcatcggtcccgccacatggcgccaactcgtcgatgccgggctcatcgaggagcttctc
gactggcgcacgctagatacccgagccctcaagacactacccggcgtcggcaccaagacc
gcacatgattggcgcacactctttgcaacggccgataaacgctccccacggcgctggcta
cgtgctctgggactccctgccatcccgcaggacgccctcgaggcgatactcgcacgacac
gacatgcgtgagctcacgcaatggacgtcatccgcttggcaaggctattcaggcattggg
gaaacgcgcgcgaaacagctgggggagtttttccaccatccggaaatacgacgcttattg
aaatcactgcagaaagaaaagataccgcgcgaggaaggggcgaccgaaacggtcaacagt
gcgcgttaa
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