Cajanus cajan (pigeon pea): 109815365
Help
Entry
109815365 CDS
T04868
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
109815365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccaj03400
]
109815365
Enzymes [BR:
ccaj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
109815365
DNA repair and recombination proteins [BR:
ccaj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
109815365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
TPGS1_C
AEP-like
T_Ag_DNA_bind
Motif
Other DBs
NCBI-GeneID:
109815365
NCBI-ProteinID:
XP_020235663
LinkDB
All DBs
Position
Unknown
AA seq
1177 aa
AA seq
DB search
MTEQTKLSVLCSLFTWTQRAKSSAKKRAKFRKFLDAFCTDRNFFPAVRLLLPNLDRHRGS
XXLKESVLATSLIDALGISRDSPDALRLVNWRKGGASTGATAGNFALVASEVLQRRQGTA
SGGLTIRELNELLDRLASAESRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVGNATEAWK
KLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHAMSEIIIQNVLVDRCILD
GEMLVWDTSLKRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQTLKERH
EILCKIVRPMKGRLEILVPNGGINSHLSSGEPCWSFIAHTVDEVERFFKETIENRDEGIV
LKDCSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERP
SPNTHPKRFISFCRVGTGLSDDELDAVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPD
VWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWHECLDVQSFIELVH
SSNGTTQRGTEYGSKQDNKPKQTKSSKRGEKKNMSIVPSHLIQTDVSSIKGSSLIFSNMM
FYFVNVPPSHSLESFHKIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHYS
WVLDSYAQKKLVCLHPKYFLFLSEQTKKKLQEEIDEFSDSYYLDLALGDIKQLLSNIHRS
EDVSTVDHYRKKYCPKDKWSLFYGCSIYFHTSIPSLKGDWHFILQLSLRRFKVEVLMGGG
KVTSNIACASHLVALLVPGCQTDFEEIESSFTSVERKFLRSKRLCIVKSQWLEDCSDSSQ
RLSEDSYSLKPWGIEESTAEDCEQDLVLEAHQSGYNVEDQNISNSVKGNQQRSAKAACED
SMALVSQEKGGQRKRGRPAGSGTKKVKPAAKQARRARVQNVKKPAKLYEYESSDESDSHD
KRPIEQEIDTSARSLDFYKKHSEPQESEERGYVQVAETVESSRPDNIDKQEDLKSNEHER
TLVPELEMADKHNEVSEKLEISADPLQAMLFDMIPSLATKKDEQPMNLSLREEKQPEISN
AEAEKLPESSNAEEEPTTIKKKKVSYKDVASQLLKDW
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgacggagcaaaccaagttgagcgtgttgtgcagcctcttcacgtggacgcagcgagcc
aagtcgtcggcgaagaagcgcgccaagttccgcaagttcctcgacgccttctgcaccgac
cgcaacttcttccccgccgtccgcctcctcctccccaacctcgaccgccaccgcggctcn
nnnnncctcaaggagtccgtcctcgccacctccctcatcgacgccctcggcatctcccgc
gactcccccgacgccctccgcctcgtcaactggcgcaagggcggcgcctccaccggcgcc
accgccggaaatttcgccctcgtcgcctccgaggtgctgcagcggaggcaggggacggct
tcgggtggattgacgatcagggagcttaatgagttgcttgacaggttggcttccgctgaa
agcagggctgagaaaattttggttctttctacccttatccaaaagactaatgcacaggaa
atgaagtggattatcatgataattctgaaagatctaaagctgggaattagtgaaaaaagc
atttttcatgagttccatcctgatgcagaagacttgtttaatgttacctgtgacttaaaa
ttagtatgtgaaaagctaagggatcgaaatcaacgtcataagcggcaggatattgaagtt
ggaaaagctgtacgcccccaattagctaagagagttggtaatgcaactgaagcatggaag
aagcttcatgggaaggaagtggttgttgagtgcaaatttgatggtgaccgcattcaaatt
cataaaaatggaactgagatacattttttctcaaggaactttattgatcattctgaatat
gcacatgcgatgtcagaaatcataattcaaaatgttcttgtagataggtgcatccttgat
ggtgaaatgttggtgtgggacacatccttgaaacgttttgctgagtttggctcaaatcag
gaaatagccaaggcagcaagagatggacttgatagtgatagacagttatgctatgttgca
tttgatatcctttattttggagatactagtgtgattcaccaaactttgaaggaacgacat
gagattttgtgtaaaattgtaaggccaatgaagggtcgtttggaaattttagtacctaat
ggtggtatcaacagccatctttcttctggtgaaccttgttggtcatttattgctcatact
gtggatgaagtcgagaggtttttcaaagaaaccattgaaaatagagacgagggaattgtt
ttaaaagactgcagctccaaatgggaacctagtgatcgtagtggaaagtggctgaaactg
aagccagaatacattcaagctggttctgatctggatgtacttatcataggtggttactat
ggttctggacgacgtggaggagaggttgctcagttcttggttggccttgcagagcgtcca
tccccaaatacacaccctaagcgatttatctccttttgcagagttggtactggactctct
gatgatgagcttgatgctgtagtaaccaaactaaaaccttacttcagaaagtatgaatat
ccaaagaagaggccaccaagtttttatcaagtaactaatcattcaaaggaaagacctgat
gtgtgggttgatagccctgagaaatcaattattctgtctataaccagtgacatccgaact
atagaatctgaggtatttgctgctccctacagtctgagatttcccaggattgacagggtg
agatatgataaagcttggcatgaatgccttgatgttcaatcatttatagaactagtacat
tctagcaatggtaccacacagaggggtacagaatatggcagcaagcaggacaataaacca
aagcaaacaaagtcctccaaaaggggagaaaagaaaaacatgtccattgttccttcgcat
ttaattcaaactgatgtttccagcattaaggggagttccttaatattttccaacatgatg
ttctactttgttaatgtgcctccatctcattctcttgagtcctttcacaaaataattgct
gagaatgggggaactttttcaatgaatttgaataactcagtcacgcattgtgttgcagca
gacagcaaggggtttaaattcgaagcagcaaaacgtcacggtgatatcattcattattct
tgggtattagattcctatgcacaaaagaagcttgtctgcttacatccaaagtacttcctc
ttcctatctgaacagacaaagaagaagttacaagaagaaattgatgagttctcagactct
tactacttggatcttgctcttggagacatcaagcagctcttaagcaatattcataggtca
gaagatgtcagcactgtcgatcattacaggaaaaaatactgtccaaaggataagtggtct
ttattttatggatgctccatttatttccacacttcaataccttcattgaaaggagattgg
cattttatattgcaactttctttgaggagattcaaggttgaagttctcatgggtggtgga
aaagttacctctaatattgcatgtgcatctcatttagtggccttgctcgttccaggatgt
cagactgactttgaagaaatagagagtagtttcacttcagtagaaagaaaatttctccga
agcaagaggctgtgcatagttaaatcccagtggttagaagattgttcagacagtagccaa
agattatcagaagactcttacagtttgaagccctggggaatagaagagtcaactgctgaa
gattgtgaacaggacttggtgttagaggctcatcagagtggatataatgtagaagaccaa
aatatttctaactctgtcaagggaaatcaacagagaagtgcaaaagctgcttgtgaagac
agtatggctttggtatcccaagagaagggtggccaaagaaaaagaggaagaccagcaggc
agtggtaccaaaaaagtaaaaccagctgccaaacaagcccgaagagcacgagtacaaaat
gtgaaaaagcctgctaagttatatgaatatgaatcatcagatgaaagtgattctcatgac
aaaagaccaattgagcaggagattgacactagcgcaagaagtcttgatttttacaagaaa
cattcagaaccccaggagagtgaggaacgtggatatgtccaagttgctgaaacagtggaa
agttctagaccagataatatagacaagcaagaagacttgaaaagcaatgaacatgaaaga
acattggttcctgaattagaaatggctgataagcacaatgaggtgtctgagaaacttgaa
atttcagctgaccccttgcaggcgatgttatttgacatgattcctagccttgccaccaaa
aaagatgagcaacctatgaatcttagtcttagagaagagaagcaaccagaaatctccaat
gcagaggcagagaagctaccagaaagctccaatgcagaagaagagcctacaactataaag
aaaaagaaagttagctacaaggatgttgctagtcagctgctgaaggattggtag
DBGET
integrated database retrieval system
