Clostridium caseinilyticum: ACFLKC_15575
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Entry
ACFLKC_15575 CDS
T11275
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccak Clostridium caseinilyticum
Pathway
ccak03030
DNA replication
ccak03410
Base excision repair
ccak03420
Nucleotide excision repair
ccak03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACFLKC_15575 (ligA)
03410 Base excision repair
ACFLKC_15575 (ligA)
03420 Nucleotide excision repair
ACFLKC_15575 (ligA)
03430 Mismatch repair
ACFLKC_15575 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccak03032
]
ACFLKC_15575 (ligA)
03400 DNA repair and recombination proteins [BR:
ccak03400
]
ACFLKC_15575 (ligA)
Enzymes [BR:
ccak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACFLKC_15575 (ligA)
DNA replication proteins [BR:
ccak03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACFLKC_15575 (ligA)
DNA repair and recombination proteins [BR:
ccak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACFLKC_15575 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACFLKC_15575 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACFLKC_15575 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACFLKC_15575 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
PTCB-BRCT
5_3_exonuc
DNA_pol_lambd_f
DNA_ligase_ZBD
RNA_ligase
BRCT_2
E2_bind
Nlig-Ia
DUF7501
RUBY_RBDX
Zn_ribbon_PADR1
Motif
Other DBs
NCBI-ProteinID:
XLQ84300
LinkDB
All DBs
Position
complement(3385897..3387891)
Genome browser
AA seq
664 aa
AA seq
DB search
MNSKLERMEELVEELNQYAREYYLLDNPSVSDKEYDLKYDELVSLEKETKVMLSYSPTQR
VGDNILSEFSKYTHKGRLWSLDKAQNIDQLIEWHNRNLKVIEQYNDMSEEKLPELRYIVT
KKFDGLTVNCTYDENGILIKGATRGTGIIGEDITAQIKTIKTVPLKIKNKHVIEIHGEAI
MTKEAFEEYNKNAKVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDIGYNEGPEFKSYT
EMMKFIKDMGLPQDNYIKECTNMEEVEKEIQYIESIREELEYDIDGAVIVVDDIKTREIL
GYTIKFPKWAIAYKFEAKEITTKLLEVEWNVGRSGRVTPTALLEPVELGGVTVKRATLNN
MDDIRRKNVKLGAKVLVRRSNDVIPEIMGVVEESLEETEEIEVPEKCPYCGSHLVQNGVH
YYCENTLSCKPQMVKSIVHFASREAMNIAGFSEKTAEQLFEKLDIKSIADLYKIKKEELL
TLEKFKDKKSQNLIDAIQNSKDCDLASFIYALGIPNVGKKTANDLVAKFKTLENIENATI
EELVEVPDVGEIVAKSAYDFFADEKIINNIEELLNLGVNPYYEEEIINENPFMNKTIVVT
GSLNNYSRGEIKDKLQSLGAKVSSSVSKNTDYVLAGEKPGSKYDKAVNLGIKVIDEDEFF
NMIK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaatagcaagttagagagaatggaagaacttgtagaagaattaaatcagtatgcccga
gagtattatttattagataatcctagtgtatctgataaagaatatgatttaaaatatgat
gaattagtaagtttagagaaagaaactaaagttatgttatcttattcaccaacccaaagg
gtaggagacaatatattaagtgagtttagtaaatatactcataaaggaaggctttggagt
ttagataaagctcaaaatatagatcaattgatagaatggcataatagaaatttaaaagtt
atagagcaatataatgatatgagtgaggaaaaattaccagagttaagatatatagttact
aaaaaatttgatggattaacagtaaactgtacctatgatgagaatggcattttaataaag
ggtgctactaggggaacaggaattataggtgaagatataacagctcaaataaaaactata
aagacagttccattaaaaataaaaaataaacatgttatagagatacatggagaagctata
atgactaaagaagcttttgaagaatataataaaaatgctaaagttccattaaaaaattta
agaaatggtgcagcaggagcccttagaaatttagatattaaagaaactgctaggagaaat
ttatctgcatttttttatgatataggttataatgaaggtccagaatttaaaagttataca
gaaatgatgaaatttataaaagatatgggattgcctcaagataattatattaaagagtgt
actaacatggaagaagtagaaaaagaaattcaatatatagaatctataagggaagaactt
gagtatgatatagatggagcggtaattgtcgtagatgatattaaaacaagagaaatatta
ggatatactataaaattccctaaatgggctatagcttataaatttgaagctaaggaaatt
actacaaagcttttagaggtagaatggaatgtaggaagaagtggaagagttactccaact
gcattattggagcctgtagaactaggtggtgttacagtaaaaagagctacactaaataat
atggatgatattcgaagaaaaaatgtaaaattaggtgctaaagttttagttagaagatct
aatgatgttatacccgagataatgggagtagtagaagaatcattggaagaaactgaagaa
atagaggtaccagaaaaatgtccttattgtggtagccatttagtgcaaaacggagtgcat
tattattgtgaaaatacattatcttgtaaaccacaaatggtaaaaagtatagttcatttt
gctagcagagaagctatgaatatagcaggatttagtgaaaaaactgcagaacaacttttt
gaaaaattagatataaaatctatagcagatttgtataaaattaaaaaagaagaactatta
actttagaaaaatttaaggataaaaagtctcaaaatcttatagatgctatacaaaatagt
aaagattgtgacttagcatcatttatatatgcattaggaatacctaatgtaggtaaaaaa
actgccaatgatttagtagctaaatttaaaacattagaaaatatagaaaatgcaacaata
gaagaattagtagaagtgccagatgtgggagaaatagtagctaagagtgcatatgacttt
tttgctgatgaaaaaatcataaataatatagaggaattattaaatttaggtgtaaaccct
tattatgaagaagaaataattaatgaaaacccttttatgaacaaaactatagttgtaaca
ggaagcttgaataattatagtagaggggaaataaaagataaattacagtccttaggagca
aaagtttcaagtagtgttagtaaaaatacagattatgtcttagcaggagaaaaaccagga
tctaaatatgataaagcagttaatttaggaataaaagtaatagatgaagatgaatttttc
aatatgattaaataa
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