Cupriavidus campinensis: M5D45_08625
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Entry
M5D45_08625 CDS
T08350
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccam
Cupriavidus campinensis
Pathway
ccam03030
DNA replication
ccam03410
Base excision repair
ccam03420
Nucleotide excision repair
ccam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M5D45_08625 (ligA)
03410 Base excision repair
M5D45_08625 (ligA)
03420 Nucleotide excision repair
M5D45_08625 (ligA)
03430 Mismatch repair
M5D45_08625 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccam03032
]
M5D45_08625 (ligA)
03400 DNA repair and recombination proteins [BR:
ccam03400
]
M5D45_08625 (ligA)
Enzymes [BR:
ccam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M5D45_08625 (ligA)
DNA replication proteins [BR:
ccam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M5D45_08625 (ligA)
DNA repair and recombination proteins [BR:
ccam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M5D45_08625 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M5D45_08625 (ligA)
MMR (mismatch excision repair)
DNA ligase
M5D45_08625 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M5D45_08625 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
URF05834
UniProt:
A0AAE9L3Y7
LinkDB
All DBs
Position
1:complement(1837775..1839931)
Genome browser
AA seq
718 aa
AA seq
DB search
MTAKTQGAQAPASAPAGALPADAAATARVQWLRDELERHAYQYYVLDDPSIPDAEYDALF
SELQALETEHPDLLTDDSPTQRVGGAPLSAFDSVRHRVPMLSLNNGFADEDVVNFDRRCA
QGLGRTAAPAPADGHDLFSAAEATDQAVEYACELKFDGLAMSLRYEDGRLVQAATRGDGE
TGEDVTANVRTIKAIPLKLRGKAPAVLEVRGEVFMYRAEFDKLNERQAEAGEKTFVNPRN
AAAGSLRQLDPRITAKRPLSFFAYGIGELQGADRPATHSVMLDGFAGLGLPVCAERQVVK
GAQGLLAFYRDIGARRDQLPYDIDGVVYKVNAIAEQEQLGFVSRAPRFALAHKFPAQEMT
TTVEDIEVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRRKDVHIGDTVIVRRAG
DVIPEVVAVVLERRPADARAFVMPTTCPVCGSHVERLEDEAIARCTGGLICAAQRKQALL
HFAQRRAMDIEGLGDKVVEQLVDQGIVRTPADLFKLGVAKLAALDRMADKSATNLVAAID
KSRSTTLNRFIFALGIRHVGEATAKDIAKHFGKLDNLLAADEAALLEVNDVGPVVAQSIA
NFLGEPHNVEVVEQLRAAGVHWPESEPAARAPLPLAGKTFVLTGTLPTLSREDAKERLEA
AGAKVAGSVSKKTDYVVAGAEAGSKLEKAQALGVAVIDEDGMLALLADATGAQPEDAQ
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccaagactcaaggcgcgcaggctccggcctccgcgcccgccggtgcgttgccg
gccgatgccgccgctaccgcgcgcgtgcaatggctgcgcgatgaactcgaacgccacgcc
taccagtactacgtgctcgatgatccgtcgattccggacgccgagtacgacgcgctgttc
agcgaactccaggcgctggagaccgagcatcccgacctgctgaccgacgattcgcccacc
cagcgcgtgggcggcgcgccgttgtccgcgttcgattccgtgcggcatcgcgtgccgatg
ctgtcgctgaacaatggcttcgccgacgaagatgtcgtcaatttcgaccgccgctgcgcc
caggggctgggccggaccgccgcgcccgcgccagctgacggccacgacctgttcagcgcc
gccgaggcgaccgatcaggccgtggaatacgcctgcgaactgaagttcgacggcctggcg
atgtcgctgcgctacgaggacggcaggctcgtgcaggccgccacgcgcggcgacggcgag
accggcgaggacgtgaccgccaacgtgcggaccatcaaggcgattccgctgaagctgcgc
ggcaaggcgccggccgtgctggaagtgcgcggcgaggtcttcatgtaccgcgccgagttc
gacaagctcaatgaacgccaggccgaggccggcgagaagaccttcgtcaatccgcgcaac
gccgccgccggcagcctgcggcagctggacccgcgcatcaccgccaagcggccgctgtcc
ttcttcgcctacgggattggcgagttgcagggcgcggaccgtcccgccacccacagcgtg
atgctcgacggctttgccgggctgggcctgccggtctgcgccgagcgccaggtggtgaag
ggtgcgcagggcctgctggccttctatcgcgatattggggcgcgccgcgaccagttgccg
tacgacatcgacggcgtggtctacaaggtcaacgccattgccgagcaggagcagcttggc
ttcgtctcgcgcgcgccgcgctttgcgctggcgcacaagttcccggcgcaggagatgacc
acgaccgtcgaggacatcgaggtgcaggtgggccgcaccggcgccattacgcccgtggcg
cggctcgcgccggtgttcgtgggcggcgtgaccgtgaccaacgccacgctccacaacgag
gacgagatccgccgcaaggatgtgcatatcggcgatacggtgatcgtgcgccgtgccggc
gacgtgattccggaggtggtggccgtggtgctggagcggcgcccggccgacgcgcgcgcg
tttgtcatgccgaccacctgcccggtgtgcggctcgcacgtggagcgcctggaggacgag
gccatcgcccgctgtacgggtggcctgatctgcgccgcgcagcgcaagcaggccctgctg
cactttgcccagcgccgcgcaatggacatcgagggcctgggcgacaaggtggtggagcaa
ctggtcgaccagggcatcgtccgcacgccggcggatctcttcaagcttggcgtggcgaag
ctggccgcgctggaccggatggccgacaagtcggccacgaacctcgtggcggccatcgac
aagtcgcgcagcaccacgctgaaccgctttatcttcgcgctgggcatccgccacgtgggc
gaggcgacggccaaggatattgccaagcactttggcaagctggacaacctgctggccgcc
gacgaggccgctttgctggaagtcaacgacgtcgggccggtggtggcgcagtcgatcgcc
aacttcctgggcgagccgcacaatgtggaggtggtcgagcagctgcgcgccgccggcgta
cactggccggagagcgagcccgccgcccgcgcgccgctgccgctggccggcaagaccttc
gtgctgaccggcacgctgccgacgctctcgcgtgaggacgcaaaggagcgactggaagcg
gccggcgccaaggtggctggctcggtgtcgaagaagaccgactacgtggtggccggtgcc
gaggcgggcagcaagcttgagaaggcgcaggcgcttggcgtggcggtgatcgacgaggat
ggcatgctggcgttgctggcggacgccacgggcgcacaaccggaggacgcgcaatga
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