Castor canadensis (American beaver): 109686393
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Entry
109686393 CDS
T04791
Symbol
Kdm2b
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
109686393 (Kdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccan03000
]
109686393 (Kdm2b)
04121 Ubiquitin system [BR:
ccan04121
]
109686393 (Kdm2b)
03036 Chromosome and associated proteins [BR:
ccan03036
]
109686393 (Kdm2b)
Enzymes [BR:
ccan01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
109686393 (Kdm2b)
Transcription factors [BR:
ccan03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
109686393 (Kdm2b)
Ubiquitin system [BR:
ccan04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
109686393 (Kdm2b)
Chromosome and associated proteins [BR:
ccan03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
109686393 (Kdm2b)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
109686393 (Kdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
JHD
Cupin_8
JmjC
AppA_SCHIC
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
109686393
NCBI-ProteinID:
XP_020019265
UniProt:
A0A8C0VX70
LinkDB
All DBs
Position
Unknown
AA seq
1306 aa
AA seq
DB search
MEAEKDSGRRLRPIDRQRYDENEDLSDVEEIVSVRGFSLEEKLRSQLYQGDFVHAMEGKD
FNYEYVQREALRVPLVFREKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEM
SMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQ
TEATNAIAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNL
ALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYCVTQRSYLTQEYQRESMLV
DAPRKASIDGFSSDSWLEMEEESCEQQPQEEEEEKEEEGDGADKVPKPPTDGPASPTSTP
SEEQDNSGKRPKAPAMRFLKRTLSNESEESVKSATMPIDYPKTPTGSPATEVSAKWTHLT
EFELKGLKALVEKLESLPENKKCVPEGIEDPQALLEGVKNVLKEHADDDPSLAITGVPVV
SWPKKTPKNRAVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFC
KDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSI
CNEIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKE
QKMNRDNKEGQEPAKRRSECEEAPRRRSDEHPKKVPPDSILRRKSDDVHLRRKRKYEKPQ
ELSGRKRASTLQTSPGSSSHLSPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKLFRKKRR
SWKNAEDRLALANKPLRRFKQEPEDDLPEAPPKTRESDHSRSSSPTAGPSTEGAEGPEEK
KKVKMRRKRRLPNKELSKELSKELNHEIQKTESSLAHENHQPIKSEPESENEEPKRPLGL
CERPHRFSKGLNGTPRELRHPLGPSLRSPPRVISRPPPSVSPPKCIQMERHVIRPPPISP
PPDSLPLDDGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTWNRWCCDKRLWTRIDLNHC
KSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWIAVSALCSS
SCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDITDASL
RLIIRHMPLLSRLHLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSFFK
RCGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagactctggaagaagattgcgcccgattgaccgccagagatacgac
gagaacgaagacttgtcggacgtggaggagatcgttagcgtccgtggcttcagcctggag
gagaagctgcgcagccagctgtaccagggggacttcgtgcacgccatggagggcaaagat
ttcaactatgagtacgttcagagagaagctctcagggttcccctggtatttcgagaaaag
gacggactaggaattaagatgcctgaccctgatttcacagtccgagatgtcaaactccta
gtagggagccggcggctggtggacgtgatggacgtgaacacccagaagggcacagagatg
agcatgtcccagtttgtgcggtattacgagacacccgaggcacagcgggacaagctgtac
aacgtcatcagcctggagttcagccacaccaagctggagcacctggtcaagcgtcccact
gtggtggacctggtggactgggtggacaacatgtggccacagcacctgaaggagaagcag
acagaagccacaaatgccatcgcagagatgaagtaccccaaagtgaagaagtactgtctg
atgagtgtgaaaggttgtttcactgacttccacattgacttcggaggcacttccgtgtgg
taccatgttttccggggtgggaagatcttttggctgatccctcccaccctgcacaatttg
gcactgtatgaggagtgggtactgtcaggcaaacagagcgacatctttctgggagaccgt
gtggaacgatgccaaagaattgagctgaaacagggctacacgtttttcatcccttctggt
tggatccatgcagtctacacccctgtagactctctggtgttcggcgggaacatcctgcac
agcttcaacgtgcccatgcagctgcggatctacgagatcgaggacagaacccgggttcag
cccaagttccgctaccccttctactatgagatgtgctggtatgtcttggagagatacgtg
tactgtgtgacccagcgctcctacctcactcaggaataccagagagaatccatgcttgtt
gatgccccgagaaaagccagcatagacggcttctcatctgattcctggctggagatggag
gaggagtcctgtgagcagcaaccccaggaagaggaggaggagaaggaggaagagggagat
ggtgcagataaggtgcccaagcctcccacagatggccctgcttcacccaccagcacccca
tcggaggagcaggacaactctgggaagaggcccaaagcacctgccatgcggttcctcaag
aggactttgtcgaacgagtcggaggaaagtgtgaagtcggcaacgatgcccatagactac
ccgaagacgcccactggctctcctgccactgaggtctctgccaagtggacccacctcaca
gagtttgagttgaagggcctaaaggccctggtggagaaactggaatccctgccagagaat
aagaagtgtgttcccgagggcatcgaggacccccaggcactcctggagggcgtgaagaat
gtcctgaaggagcatgccgacgatgatcccagtctggctatcactggggtccctgtggtc
agttggccaaagaagactccaaagaaccgggcggtgggtcgccccaagggcaagctgggc
ccagcctccgcggtgaagttggctgccaacaggaccacagcaggggctcgccggcgccgg
acgagatgccgcaagtgcgaggcctgcctgcggacggagtgcggagagtgccacttctgc
aaggacatgaagaagttcgggggccctgggcggatgaaacagagctgcatcatgcggcag
tgcatcgcgccagtgctgccccacaccgctgtgtgccttgtgtgtggcgaggcagggaag
gaggacactgtggaagaggaagaaggcaagtttaacctcatgctcatggagtgctccatc
tgcaacgagattatccaccctggatgccttaagattaaagagtcagagggtgtggtcaac
gatgagcttcccaattgctgggagtgtccgaagtgtaaccacgccggcaagaccgggaaa
caaaagcgtggccctggctttaagtatgcctccaacctgcccggctccctgctcaaggag
cagaagatgaaccgggacaacaaggaagggcaggagcctgccaagcggaggagtgagtgt
gaggaggcgccccggcgtaggtcagacgagcaccccaagaaggtgcctccagacagcatc
ctgcgccgaaagtctgatgatgtgcacctgaggaggaagcggaaatacgagaagccccaa
gagctgagtggacgcaagcgagcctcgactcttcaaacgtcccccggttcctcctctcac
ctctcgccgaggccccctctaggcagcagcctcagcccctggtggagatccagtctcact
tacttccagcagcagctaaaacctggcaaagaagataagcttttcaggaaaaagcggcgg
tcctggaagaacgctgaggatcggctggctctggccaacaagcccctccgacgcttcaag
caggaacctgaggacgatctgcctgaggcaccccccaagaccagggagagcgaccattca
cgctccagttcacccaccgctgggcccagcaccgagggagccgagggcccagaggagaag
aagaaggtgaagatgcgcaggaaacggcgacttcccaacaaagagctgagcaaggagctg
agtaaggagctcaatcatgagatccagaagacagagagcagcctggcccatgagaaccac
cagcccatcaagtcagagcctgagagcgagaacgaggagcccaagcggcccctgggcctc
tgtgagcgccctcaccgctttagtaaggggctcaacggcaccccccgggaactgcggcac
ccgctggggcccagcctgcgcagcccaccccgggtcatctcccggcccccgccctctgtg
tccccacctaagtgcatccagatggagcgccatgtgatccggccacctcccatcagcccc
ccacctgactcgctgcccctggacgatggggcagcccatgtcatgcacagggaggtgtgg
atggccgtcttcagctacctcagccaccaagacctttgtgtctgcatgcgggtctgcagg
acctggaaccgctggtgctgcgataagcggttgtggacccgcattgacctgaaccactgc
aagtccatcacgcctctgatgctgagtggcatcatccggcgacagcctgtctctctcgac
ctcagctggaccaatatctccaagaagcagctgagctggctcatcaaccggttgcctggg
cttcgagacttggtgctgtcaggctgctcttggattgcagtctcagccctctgtagctcc
agttgtccattgctccggaccctggatgtccagtgggtagaaggactaaaagatgcccag
atgagggacctcctctccccacccacagataacaggccaggtcagatggacaatcggagc
aagctccggaacattgtggagttgcgcctggctggcctggacatcacagatgcctccctg
cgactcatcatccgccacatgcccttgctctccaggcttcacctcagttactgtaaccat
gtcaccgaccagtccatcaacctgctcactgcagtcggcaccactacccgagattccctg
accgagatcaacctgtcagactgcaataaggtcactgaccagtgcctgtccttcttcaaa
cgctgtggaaacatctgtcatattgacctgaggtactgcaagcaagtcaccaaggaaggc
tgtgagcagttcatagctgagatgtctgtgagtgtccagtttgggcaagtggaagaaaaa
ctcctgcaaaaactaagttag
DBGET
integrated database retrieval system
