Castor canadensis (American beaver): 109699345
Help
Entry
109699345 CDS
T04791
Symbol
Lig4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
109699345 (Lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccan03400
]
109699345 (Lig4)
Enzymes [BR:
ccan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
109699345 (Lig4)
DNA repair and recombination proteins [BR:
ccan03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
109699345 (Lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
GatB_Yqey
Motif
Other DBs
NCBI-GeneID:
109699345
NCBI-ProteinID:
XP_020039591
UniProt:
A0A8B7W6J8
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MAASQTSQTVASHVPFADLCSTLERIQKSKGHVEKIRHFTEFLDSWRKFHDALHKNQKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRQGKDALKLLNYRTPSAVHS
DAGDFALTAYFVLKPRCLQKGSLSIQQVNELLDSVASNNSSKRKDLVKKSLLQLITQSSA
LEQKWLIRMILKDLKLGVGQQTVFPVFHSDATELYSVTTDLEKVCRQLHDPSVGLSDISI
TLFSAFRPMLAAIADVERIEKDMKHQSFYIETKLDGERMQMHKDGDVYQYFSRNGYNYTD
QFGASPQEGSLTPFIHNAFRTDVQVCILDGEMMAYNPNTQTFMQKGDKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGRETLRKRYEILSGTFIPIQGRMEIVQKTQAHTKNEVVDALNE
AIDKREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGSRGGMM
SHFLCAVAEKPPPGKRPSVFHTLSRVGSGYTMKELYDLGLKLAKHWKPFHKKTPPSSIIC
GTEKPEVYIEPCNSVIVQVKAAEIVPSEMYKTGCTLRFPRIKKVRDDKEWHECMTLDDLE
QLRGKASGKLVSKHLDVGGDDEPQEKKRKTAPKMKKVIGIIEHLKAPNLSNISKVSNIFE
DVEFCVMSGTGSHTKPELENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKNIISSDKHDV
VKPEWLLECFKTQSCVPWQPRFMIHMCPSTKQHFACEYDCYGDSYFVDTDLSQLKEVFSG
IKNSSAQTPEEMACVIADLECRYSWDHFPLSMFRHHTVYLDLYAVINDPSTKTKGAKLTF
TALELRFHGARVVSCLAEGVSHVVIGEDQSRVADFKAFRRTLKKKFKIVQERWVTESIDR
CELQEENQYLI
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctcacaaacttcacaaactgttgcatctcacgttccctttgcagatttatgt
tcaactttagaacgaatacagaaaagtaaaggacatgtagaaaaaattagacactttaca
gaatttttagattcttggagaaaatttcatgatgcccttcataagaaccaaaaagatgtt
acagactctttttacccagcaatgagacttattcttcctcagctggaaagagagagaatg
gcttatggaatcaaagaaactatgcttgctaagctttatattgaattgcttaacttaccg
agacaaggaaaagatgcccttaagctcctgaattacagaaccccttctgcagttcacagt
gatgcgggagacttcgcactgactgcatactttgtgttgaagccaagatgcttacagaaa
ggaagcttaagcatacagcaggtaaatgaacttttagactctgttgccagcaataattct
tccaaaagaaaagacttagtaaagaagagccttctacaacttataactcagagttcagcc
cttgagcaaaagtggctcatacgaatgattttgaaagacttaaagcttggtgttggtcag
caaactgtatttcctgtttttcacagtgatgctactgagctgtatagtgttaccacagat
ctggaaaaggtctgtaggcagctgcatgatccgtctgtaggcctcagtgatatttctatc
acattgttttctgcctttagaccaatgctcgccgccatagcagatgttgagcgcattgaa
aaggacatgaaacaccagagtttctacatcgaaaccaagctcgatggtgagcgtatgcag
atgcacaaagatggggacgtgtaccaatacttctcccgaaatggatataattacactgat
cagtttggtgcttctccgcaggaaggttctctcaccccattcattcataacgcattcaga
acagatgtacaagtctgtatccttgacggtgagatgatggcctacaacccaaatacacaa
acatttatgcagaagggggacaagtttgatattaaaagaatggtagaagattctgatttg
cagacttgttactgtgtttttgatgtattgatggttaataataaaaagctaggacgtgag
accctgagaaagaggtacgagattcttagtggtacttttataccaatacaaggtagaatg
gaaatagtgcagaaaacgcaggctcacactaagaacgaggtggtcgatgcattgaatgag
gcgatagataaaagagaagagggaatcatggtgaagcatcctctgtctatttacaagccg
gacaaaagaggtgaaggatggttaaaaatcaaaccagagtatgtcagcggactgatggat
gaattggacatcttaattgtgggcggctactggggcaaaggttcacggggtggaatgatg
tctcattttttgtgtgcagtggcagagaagcctcctcctgggaagaggccgtctgtattt
cacactctctctcgtgttggctcaggatataccatgaaagagctgtatgatctgggtttg
aaactggccaaacactggaagccttttcataaaaaaactccaccaagtagcattatatgt
ggaacagagaagccagaagtgtacatcgaaccgtgtaattctgtcatcgttcaggttaag
gcagcagagatagtccccagtgaaatgtataaaactggctgtacattgcgttttccacgg
attaagaaggtaagagatgacaaagagtggcatgaatgcatgactctggacgacttagag
caacttaggggaaaggcatctggaaagcttgtgtcaaaacaccttgatgtaggtggtgat
gatgaacctcaagaaaaaaagcggaaaactgccccaaagatgaaaaaagttattggaatt
attgaacacttaaaagcacctaacctttctaacataagcaaagtctctaatatatttgaa
gatgttgagttttgtgtcatgagtggaacaggcagtcatacaaaacctgagctggagaac
agaattgcagaatttggtggctatatagtacaaaatccaggaccagacacatactgtgtt
attgcagggtctgagaacatcagagtgaaaaacataatttcttcagataagcatgatgtt
gtcaagcctgaatggcttttagagtgttttaagacccaaagttgtgtgccatggcaacct
cgctttatgattcatatgtgtccatcaacaaaacagcattttgcctgtgaatatgattgc
tatggtgatagttactttgttgacacggatttgagccaactgaaagaagtattttcggga
attaagaattctagtgcacagactcctgaagaaatggcctgtgtgattgctgatctagag
tgtcggtattcttgggaccactttcctctcagtatgtttcgtcatcacaccgtttatttg
gacttgtatgcggtgattaatgatccaagcaccaaaactaagggagcgaaattaactttt
acagccttggagcttcggtttcatggagcaagagtagtttcttgtttagctgagggggtg
tctcatgtagtcattggagaggatcagagtcgtgttgcagattttaaagcttttagaaga
actcttaagaaaaagtttaaaatcgtacaagaacgttgggtaactgagtcaatagaccgc
tgtgaattgcaagaggaaaatcagtatttgatttaa
DBGET
integrated database retrieval system
