Chryseobacterium capnotolerans: H5J24_00800
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Entry
H5J24_00800 CDS
T08205
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ccao
Chryseobacterium capnotolerans
Brite
KEGG Orthology (KO) [BR:
ccao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccao03009
]
H5J24_00800 (rlmD)
Enzymes [BR:
ccao01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
H5J24_00800 (rlmD)
Ribosome biogenesis [BR:
ccao03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
H5J24_00800 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Cons_hypoth95
N6_N4_Mtase
Methyltransf_15
MTS
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_4
RrnaAD
PCMT
PrmA
UPF0020
Motif
Other DBs
NCBI-ProteinID:
UHO38773
LinkDB
All DBs
Position
190827..192239
Genome browser
AA seq
470 aa
AA seq
DB search
MSRKNKKNLVLENIKLLTAGAKGVAIGKTEDGKTVLVSGAIPGDRVNVRVKKAKSKYYEG
EAVEVLEKSPFRAEPKCVHFGTCGGCKWQNMSYEKQLDFKQEEVYNNIKRIGGIEEFETM
PILGSKEQYFYRNKMEFSFSNARWLTQYEISSEENFGSKDALGFHIPGMWSKILDLKECF
LQEDPSNAIRLAVKKYAVDNGLDFFDVRNHEGFLRTLMMRQNSKGEWMVLFQLFREEKEN
REKLFAFILEKFPQIKTLVYAINPKANDSIYDLDINVYFGEGYLMEEMDGLKFKIGPKSF
FQTNYKQALELYRKTLEFADLKGDEVVYDLYTGTGTIAQYVARNAKQVIGIESVQEAIDA
AIEHAELNGLTNTTFYCGDMKNVFNDEFMENHPKADVLITDPPRDGMHQKVVEQILKLAP
EKVVYVSCNSATQARDLALMKEDYTVVKILPVDMFPQTHHVENIALLIKK
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgagcagaaagaataagaaaaatttagttcttgaaaatataaagctgttgactgccgga
gcaaaaggagtagctattggaaaaacggaagatggaaagactgtattggtttctggggca
attcccggagatcgtgttaacgtaagagtgaaaaaagccaagtctaaatattatgaggga
gaagcagtggaagtactggagaaatctcctttcagagcagaaccaaaatgtgttcatttt
ggaacttgcggcggttgcaaatggcagaatatgagctatgaaaagcagcttgattttaaa
caggaagaagtatataacaatatcaaaagaattggaggtattgaagagtttgaaaccatg
ccaattttaggatcaaaagagcagtatttttatagaaataaaatggaattctctttctcc
aatgcaagatggcttactcaatatgaaatcagctctgaagagaactttggaagcaaagat
gctttagggtttcatattcctgggatgtggagcaagattttagaccttaaagaatgtttc
ctgcaggaagatccttccaatgccatcagattagctgtgaaaaaatatgctgtagataat
ggtctggatttctttgatgtaagaaaccatgaaggcttcctgagaacactgatgatgaga
caaaactctaaaggagaatggatggtattgttccagttgtttagagaagaaaaagaaaac
agagaaaagctttttgctttcatattagagaagtttccacagatcaaaacattggtgtac
gccattaatccaaaagccaatgactctatttatgatctggatatcaatgtctattttggg
gaaggatatttaatggaagaaatggatgggctgaagtttaaaattggaccaaaatcattc
ttccagaccaattataagcaagctctagagttgtacagaaaaacacttgaatttgcagat
ttgaaaggagatgaagtggtgtacgatttatatacaggaaccggaaccattgctcagtat
gtggcaagaaatgcaaaacaggtaatcggaatagaatctgttcaggaagccattgatgca
gccattgagcatgcggaattgaatggccttaccaacactacattctattgtggagatatg
aaaaatgtctttaacgatgaatttatggaaaaccatccaaaagcagatgttttgattacc
gatcctccaagagacggaatgcaccaaaaagtagtggagcaaatattaaaattggctccg
gaaaaagtagtgtatgtaagttgtaactcagcaacacaggctagagatcttgcactgatg
aaagaagattataccgtagtgaaaattttaccggtagatatgttcccacaaactcatcat
gtggaaaatatagcattgctgattaaaaaataa
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