Chryseobacterium capnotolerans: H5J24_09025
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Entry
H5J24_09025 CDS
T08205
Name
(GenBank) RNA polymerase sigma factor RpoD/SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
ccao
Chryseobacterium capnotolerans
Pathway
ccao02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ccao00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
H5J24_09025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccao03021
]
H5J24_09025
Transcription machinery [BR:
ccao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H5J24_09025
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_r1_2
Sigma70_r4_2
DUF6285
DUF7443
Motif
Other DBs
NCBI-ProteinID:
UHO40122
LinkDB
All DBs
Position
complement(1964346..1965212)
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AA seq
288 aa
AA seq
DB search
MRQLKITKQVTNRETASLDKYLQEIGKVELITADEEVELAQRIRAGDRAALEKLIKANLR
FVVSVSKQYQNQGLSLPDLINEGNLGLMKAAKRYDETRGFKFISYAVWWIRQSILQALAE
QSRIVRLPLNKIGSINKINKAYAHLEQENERPPSPEELAEVLDMSEEDIKESMKNSGRHL
SMDAPLVEGEDSNLYDVLRSGESPSPDKDLMLESLQIEIERALNTLTPREADLVRLYFGL
NGKHPMTLEEIGETFDLTRERVRQIKEKAIKRLKHNTRSKILKSYLGK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgagacaattaaaaatcactaagcaggttaccaacagggaaactgcttcattagacaag
tatttgcaggaaattggtaaagtggaactaattactgcggacgaagaagtagaattggca
caaagaatacgtgctggcgatagagccgcattggaaaaattaatcaaagccaaccttcgt
ttcgtagtttctgtatccaagcaataccaaaaccaaggtctttccttacccgatttgatc
aatgagggtaacttaggattaatgaaggcggcaaaaaggtacgatgaaactagaggtttc
aaatttatctcttatgcagtatggtggatccgtcaatcaattttacaggcgctggctgag
caatcaagaattgtaagacttccgttgaacaaaattggttccatcaataaaattaataag
gcatacgcccaccttgagcaggaaaatgaaagaccgccttctccggaagaattggctgaa
gttcttgacatgagtgaggaggatatcaaagaatctatgaaaaactccggtagacacttg
tctatggatgcacctctagtagaaggtgaagattctaatctttatgatgtattacgttca
ggagaatcaccaagtcctgataaagacttaatgcttgaatctcttcagattgaaatcgaa
agagcattaaatactttgactccaagggaggctgatttagtaagattatactttggactg
aacggaaagcacccaatgactttagaagaaattggtgagactttcgatcttacaagagag
agagttcgtcagatcaaagaaaaagcaattaagagactaaaacacaataccagaagtaag
atccttaaatcttatttaggtaaataa
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