Chryseobacterium capnotolerans: H5J24_16695
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Entry
H5J24_16695 CDS
T08205
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ccao
Chryseobacterium capnotolerans
Pathway
ccao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H5J24_16695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccao03019
]
H5J24_16695
03009 Ribosome biogenesis [BR:
ccao03009
]
H5J24_16695
Enzymes [BR:
ccao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H5J24_16695
Messenger RNA biogenesis [BR:
ccao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H5J24_16695
Ribosome biogenesis [BR:
ccao03009
]
Prokaryotic type
rRNA helicases
H5J24_16695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UHO37355
LinkDB
All DBs
Position
complement(3590530..3592224)
Genome browser
AA seq
564 aa
AA seq
DB search
MNLFTETNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDDTSRKIQLLVLCPTRELCLQISKDIKNYSKYMDIKTTAVYGGSSIVDQMRSLKD
KPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQTF
LFSATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRLIDANP
NQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATDV
AARGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKSST
KIEINEKFIPTGEDIIKAQVGGVFEKLFTEHEDLFEFDDSLIPDLSNFTKEELVHQLLQF
QLKDLALYYKDKHDLVEQKLSSRDDDYSRRDRGRDRDRDRGRDRDRGERRDRDRGGKPRR
KDENMVRFFFNLGKKDHLKKLDVLDIINKATAGGKTKKRAEIGDIEILEKFSFFEVEKTF
KDNVLSNIQSMKFKGKDMRAEVAN
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggaaaccaatttaagtcctgatatccttaaggcaattggcgaactg
ggttacgaaagcccaacagaaatccaaaaacagactatccctttcattctttcagatatt
cgcgatttgatcgcacttgcgcagacagggacaggcaaaacagcagcgttttcgcttccg
attttggatatgattgacgatacgagtcgcaaaatccaattattggtgctttgtccgaca
cgggaattatgtcttcagatttctaaagacataaagaattattctaaatacatggacatc
aaaactactgcagtttacggtggaagtagtattgtagatcagatgagatctttaaaggat
aagccacagattattgtgggaactccaggtagggtcattgaccttatcaacagaaaggct
ttagacttttctgcgattcattggttagtattagacgaagctgatgaaatgctttctatg
ggattcaaggatgaattggaaaccattctaagcgaaactccggagacgaaacaaactttc
ttattctcggctacgatgaataaagaagtggaaagaatttccaaaaactatcttacaaaa
ccacaccgtatttcagtaggttctatcaacgaagtgaagaagaacattacacacgaatac
tatgtggtaggataccgtcagaaaaaagaagcattaaagagattaattgatgctaacccg
aaccagtattccattattttctgtagaacaagaatggaaactcaggaggttgcagatttc
ttaatgcagaacggttatgcagctgatgcccttcacggagacctttctcaagcgcagaga
gatacggtaatgaagaaattcagattgaaaaatatcgatatccttgtagccacagacgtt
gcagcaagaggattagatgtaaactctcttactcacgttattcacttctctttacctgat
gatcctgaagtattcgttcacagaagtggaagaacaggtagagcaggaaaagacggtatt
tctatggctttaatcaagcctgaggaaagcagaaagctgaagcaaatcaaatcttctact
aaaattgagattaacgaaaagtttattcctacaggagaagatattatcaaagctcaggtt
ggaggtgtttttgaaaaattatttacagaacacgaagatctttttgaatttgatgacagc
ttaatcccggatctaagcaacttcacgaaagaagaattagtacaccagttgttacagttc
caattgaaggaccttgctttatattacaaagataaacacgatcttgttgagcagaagtta
agcagcagagatgatgattactcaagaagagaccgtgggcgtgatagagatagagacaga
ggtcgcgacagagatagaggagagcgaagagacagagatcgtggtggaaaaccaagaaga
aaagatgaaaacatggtaagattcttcttcaatcttggtaaaaaagaccatttaaagaaa
cttgatgttttagatattatcaacaaagctactgctggtggaaaaaccaagaaaagagct
gaaatcggagatattgagattcttgagaaattctctttcttcgaagttgaaaaaacattc
aaagataatgttttaagcaacattcaatcgatgaaatttaaaggaaaagatatgagagct
gaagtagcgaactaa
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