Chryseobacterium capnotolerans: H5J24_20080
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Entry
H5J24_20080 CDS
T08205
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ccao
Chryseobacterium capnotolerans
Pathway
ccao03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccao00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H5J24_20080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccao03021
]
H5J24_20080
03400 DNA repair and recombination proteins [BR:
ccao03400
]
H5J24_20080
Enzymes [BR:
ccao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H5J24_20080
Transcription machinery [BR:
ccao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H5J24_20080
DNA repair and recombination proteins [BR:
ccao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H5J24_20080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
UHO37874
LinkDB
All DBs
Position
complement(4320195..4321190)
Genome browser
AA seq
331 aa
AA seq
DB search
MAILQFIKPDKVILLNSDEFKGQFEFRPLEPGFGLTIGNALRRVLLSSLEGYAISSIKIE
GVEHEFSTIPGVIEDVTEIILNLKQVRLKAAAEGQANEQVVAKVSGQTIITAGDLGKSIN
GFEVLNPDLVICNLNTDVTFEITFNIEKGRGYVPSEQNKSNNAPVGTIAIDSIFTPIKKV
QYSIENYRVEQKTDYEKLVLDIETDGSISPQNALTEASKILIYHFMLFSDERITLETEAV
KASIQYDEETLHTRQLLKSKLADMDLSVRALNCLKAAEVETLGELVSYSKSDLMKFRNFG
KKSLTELEELVHSKGLNFGFDVAKYKLDADK
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atggcaattttacaattcataaaacccgataaagtaattttacttaactctgatgaattt
aaaggtcaatttgaattcagacctttagaaccaggtttcgggcttacaatcggtaatgct
ttgagaagagtgttgctttcttctctggaaggatatgctatttcatctatcaaaatagaa
ggtgtagagcacgaattttcaactattccaggagtaatcgaagacgttaccgaaattatt
cttaacctaaagcaggttagattaaaagctgcagcagaaggccaggctaacgagcaggtt
gttgctaaagtttcaggtcaaacgattattactgctggtgatttaggaaaatcgatcaac
ggattcgaggttttaaacccggatttagtgatttgtaacctaaatactgatgtaactttc
gaaattactttcaatattgaaaaaggaagaggatatgttccttctgaacaaaataagtca
aacaatgcacctgtaggtactattgcaattgactctattttcacgccgatcaagaaagta
cagtatagcattgaaaattatcgtgtagagcaaaaaacagactacgaaaaacttgtatta
gatatagaaactgatgggtctatcagccctcagaatgctttaacagaagcttctaagata
ttaatttatcatttcatgctattctctgatgagagaatcacgcttgaaactgaagctgta
aaagcatctatccaatatgacgaagagacgcttcatacaagacaactacttaagtctaaa
ttagcagatatggatctttctgtaagagcccttaactgtctgaaagcagctgaagtagaa
actcttggagaacttgtttcttacagtaagtctgatttgatgaaattcagaaattttggt
aaaaaatctttgacagaactagaagaattagtgcattcaaaaggtcttaacttcggtttc
gacgttgcaaaatataagttagacgctgataaataa
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