Chryseobacterium capnotolerans: H5J24_23890
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Entry
H5J24_23890 CDS
T08205
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ccao
Chryseobacterium capnotolerans
Brite
KEGG Orthology (KO) [BR:
ccao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccao03016
]
H5J24_23890
Enzymes [BR:
ccao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H5J24_23890
Transfer RNA biogenesis [BR:
ccao03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H5J24_23890
Prokaryotic type
tRNA splicing ligases
H5J24_23890
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UHO38505
LinkDB
All DBs
Position
5181767..5183158
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AA seq
463 aa
AA seq
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MGNLKLKGKDILKLGYPNNQSVNVALEVMKRNFATKNIHYVKSLLKEILMHPEQFEKDLT
FGQIAETLLSSKKTEKRMLNAQRADFQIFGDNISEEAKNQLYTALKLPVSVQGALMPDAH
SGYGLPIGGVLAVENAVIPYGVGMDIGCRMSLSILDTPVSYLNGARDKYEKALAEHTKFG
MYETHKSHIDHEIFDRDTFDMIPILRRLKGKAIKQMGSSGGGNHFVEFGEVDITEEDEQI
GLPKGKYLGILSHSGSRGLGAEIAQYYSRVAVEQCPLPKEAQQFAWLDLNTHLGLEYWTA
MNLAGDYASACHDDIHRRLVKAVGGRVKARIENHHNFAWKEIHHGKEVIVHRKGATPANE
NELGMIPGSMTAKGFIVRGKGNPESLNSASHGAGRAHSRGECRSLFTQNDIKKELKLKDV
TLMGGNTEEAPMAYKDIHEVMNAQSELVDILGTFQPRIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatttaaaactaaaaggaaaagatatattaaaactgggctatccaaataatcaa
agtgtaaacgtagccttggaggtcatgaagagaaattttgctactaaaaatattcattat
gtaaaatctcttctcaaggaaattctgatgcatccggagcaattcgaaaaagatttaacc
ttcgggcaaattgcggaaaccttgctctcctctaaaaaaacagaaaaaaggatgttgaat
gcacagcgtgcagactttcagatctttggggataatatttccgaagaagctaaaaatcag
ctgtacacggcattgaagcttcctgtttctgttcagggcgcattaatgccagatgctcac
agcggttatggccttccgattggaggtgttttagccgtagaaaatgctgtaattccttac
ggagtagggatggacatcggctgcagaatgagtcttagcattttggatacccccgtttca
tatctgaacggagcaagggataaatatgaaaaagcccttgccgaacatacaaaattcgga
atgtatgagactcataaatctcatatagatcatgaaatctttgatagagatacgtttgat
atgatccctattttaaggagattaaaaggaaaagcgatcaaacagatgggatcttccgga
ggaggaaatcactttgtggaatttggtgaagtggacatcacagaagaagatgagcaaata
ggattgcctaaaggaaaatatttgggaatcctttcacacagcggttctcggggattaggt
gctgaaatagctcaatattactcaagagtagcagtagaacaatgtccgctgcctaaagaa
gctcagcaatttgcctggctggatctaaacacacacctcggtttggaatattggacggcc
atgaaccttgcaggagattatgcttctgcctgtcatgatgatatccacagaaggctggta
aaagcagtcggcggaagggtaaaagccagaattgagaaccatcacaactttgcatggaaa
gaaatccatcatggaaaagaagtgatcgttcacagaaaaggagctactccagccaatgaa
aatgaattgggaatgattcctggctctatgactgccaaaggatttatcgtccgtggaaaa
ggaaatccagaatctctgaactcagcttcacatggagcaggaagagcccactcaagagga
gaatgcaggagtctttttactcagaatgacatcaaaaaagaattgaaacttaaagatgtt
accctcatgggcggaaatacagaagaagcacctatggcttataaagacattcatgaagtc
atgaatgcgcaaagtgagttggtagacattctgggaacattccagccaagaattgtgaga
atggatagataa
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