Chryseobacterium capnotolerans: H5J24_24615
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Entry
H5J24_24615 CDS
T08205
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ccao
Chryseobacterium capnotolerans
Brite
KEGG Orthology (KO) [BR:
ccao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccao03032
]
H5J24_24615 (topA)
03400 DNA repair and recombination proteins [BR:
ccao03400
]
H5J24_24615 (topA)
Enzymes [BR:
ccao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
H5J24_24615 (topA)
DNA replication proteins [BR:
ccao03032
]
Prokaryotic type
DNA Topoisomerases
H5J24_24615 (topA)
DNA repair and recombination proteins [BR:
ccao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
H5J24_24615 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Motif
Other DBs
NCBI-ProteinID:
UHO38630
LinkDB
All DBs
Position
5339997..5342558
Genome browser
AA seq
853 aa
AA seq
DB search
MSKNLVIVESPAKAKTIQKYLGKDFEVKSSFGHIRDLPKKGMGIDLATFSPDYEVSADKK
KLVTELKAAVKKAEMVWLASDEDREGEAIAWHLADELKLKPENRKRIVFHEITKNAILKA
IENPRDIDQNLVNAQQARRVLDRIVGFEMSPVLWKKVKPGLSAGRVQSVAVRLIVEREKE
IREFVPKASFKLDGIFLNNTEQEIAAKLKKDFEKEAEAEKFLEQAKTTEFKVLNVETKPG
TRSASAPFTTSTLQQEASSRLGYNVTNTMRLAQRLYEEGFITYMRTDSVNLSQEAIEGAK
KQIISEYGAEYSSPRNYTTKSASAQEAHEAIRPTDFGVKSIGDAQLNKLYQLIYRRTLAS
QMANAKIEKTVIEIGNASLPHHFEAQGEVIIFDGFLKAYGIVKTEDDDDENNEKLLPKVK
VGEVLSYKSITATEKFTRPSARYTEAGLVRKLEELGIGRPSTYAPTIQTIQNREYVDKRE
IEPHTREVIKMSLVKDKIKKVVLDEKFGGDKNKFIPTDIGEVVNDFLTDNFREILDYGFT
ARVEESFDEIASGDQKWKEMMTNFYSKFHPRIEDVEENADRATGDRLLGVDPKTGKNVHA
RIGRFGAMIQIGETDDEEKPIFASLMSGQNIATITFEEALELFKLPFELSDFEGQAVSVG
VGRFGPYVKWGETFISIPKGEDPLSVDQKRAEEIINEKKKADAPIATYKGEPVTKGSGRF
GPFIKYKDIFVNVPKKYNFENLSQSDINELIDAKLEKEANRYIQQWEKEKISLENGRWGP
FIKFGKAMFKIPKKSDDTKYDAEELKEISLDEVKKWITDQDKNAFAEKKKPAAKKAVTTK
KTTAAKKPAAKKK
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaatttagtaatcgtagagtccccggcaaaggcaaaaactattcagaaatat
ttaggtaaggattttgaagtgaaatccagtttcggacatatccgggaccttcctaaaaaa
ggaatgggtatagatcttgccacctttagtcctgattacgaagtttcagcagacaagaag
aaattggtgacagaattaaaagctgcagtaaagaaagccgaaatggtttggctggcttcc
gatgaagaccgcgagggagaagctattgcatggcacttagcagatgaattgaaactaaag
cctgaaaacagaaaaagaattgttttccacgagattactaaaaatgccattctaaaagca
attgaaaatccaagggatatcgatcagaacttagtaaatgcccagcaggcaagaagagtg
ctggacagaatcgtaggttttgaaatgtctccggttttatggaaaaaagtaaaaccagga
ctatctgctggaagagtacaatcggtagccgtaagattaattgttgaaagagaaaaagaa
atccgtgaatttgtacccaaagcaagttttaaactagacggaattttcttaaacaataca
gaacaggaaattgcagctaaacttaaaaaagactttgaaaaagaagctgaagctgaaaaa
ttccttgagcaggcaaaaactacagaatttaaagttctgaatgttgaaacaaagccggga
acacgttctgcatccgctccttttactacttctacactacagcaggaagcttcatccaga
ttaggatacaatgtgaccaataccatgcgtctggctcagagactatatgaagaaggattc
attacttatatgagaacagactctgtaaacctttctcaggaagctattgaaggagcaaaa
aaacaaattatatcagaatacggagcagaatactcttctccaagaaactatactaccaaa
tcagcttctgcacaggaagctcacgaagctatccgtcctacggatttcggagtgaagagc
attggagatgcacagttgaataagctgtatcaattaatctacagaagaacattagcatct
cagatggcgaatgctaaaattgaaaaaacggttatcgagatcggaaatgcttcgttaccc
catcattttgaagctcagggagaagtcatcatttttgatggtttccttaaggcttacgga
attgtaaaaaccgaagatgatgatgatgaaaacaatgaaaagctattgccaaaagtaaaa
gttggtgaagtattaagttataaatccattacggcaacagaaaaattcaccagaccaagt
gcaagatatacggaagccggattggtaagaaaattagaagagttagggattggtagacca
tctacttatgcaccaaccattcagaccattcaaaatagagaatatgtggataaaagagaa
atagaaccacatacccgtgaagtgatcaaaatgtctttagtaaaagataagatcaagaaa
gtagttctggatgagaaatttggtggtgataaaaataaattcatacctacagatatagga
gaagttgtgaatgacttcttaacagataacttcagagaaatccttgattatggtttcacg
gcaagagtagaagagagtttcgacgaaattgcaagcggagatcagaaatggaaagaaatg
atgacgaatttctactcaaaattccacccgagaattgaagatgtagaagaaaatgcagac
cgtgcaaccggagacaggcttttaggagttgacccaaagaccggtaaaaatgttcatgca
agaatcggaagatttggagcgatgatccagatcggagaaactgatgatgaagagaagccg
atctttgcttcattgatgtccgggcagaatattgcgactattacctttgaagaagcattg
gaactcttcaaattgccttttgaactgagcgattttgaagggcaggcagtttctgtggga
gtaggaagattcgggccttatgtgaaatggggtgaaactttcatcagtattcccaaaggt
gaagatccgctttctgtagatcaaaaacgtgcagaagagatcattaatgaaaagaaaaaa
gctgatgctccaatcgcaacttataaaggagaacctgtaactaaaggatcaggaagattt
gggccatttatcaaatacaaagatattttcgtaaacgttccgaagaaatacaacttcgaa
aacctttcccagagtgatatcaatgaactgattgatgctaagcttgaaaaagaagccaac
cgatatatccagcaatgggaaaaagaaaaaatttcccttgaaaacggaagatgggggcca
ttcatcaaatttggaaaagccatgttcaagattccaaagaaaagtgatgataccaagtac
gacgcagaagaattgaaagaaatttctctggatgaagtcaaaaaatggatcacagatcag
gataaaaatgcttttgcagaaaagaaaaaacctgcagcaaaaaaggccgtaactactaag
aagacaaccgctgcaaaaaagccagctgctaagaagaagtaa
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