Cyprinus carpio (common carp): 109059012
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Entry
109059012 CDS
T05134
Name
(RefSeq) ATP-dependent RNA helicase A protein-like isoform X1
KO
K13184
ATP-dependent RNA/DNA helicase DHX9 [EC:
5.6.2.6
5.6.2.4
]
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccar03041
]
109059012
03012 Translation factors [BR:
ccar03012
]
109059012
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
109059012
5.6.2.6 RNA 3'-5' helicase
109059012
Spliceosome [BR:
ccar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109059012
Translation factors [BR:
ccar03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109059012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
OB_NTP_bind
Helicase_C
DEAD
HA2_N
HA2_C
Dicer_dimer
AAA_19
ResIII
nSTAND3
AAA_14
PhoH
ATPase
Motif
Other DBs
NCBI-GeneID:
109059012
NCBI-ProteinID:
XP_042632056
UniProt:
A0A8C1PFK2
LinkDB
All DBs
Position
A2:17824632..17835422
Genome browser
AA seq
1252 aa
AA seq
DB search
MTDIKSILYAWCGKKKLTPSYDIRAAGNKNRQKFLCEVRVESYSYIGMGNSANKKDAQSN
AARDFVNYLVRMKEMSPGEVPALGVSVPDGGNEEGGGFGNLPSNCPLPPHLTVKKESDSE
ASESSAPVPGVTGLGYSGFGNAQWERGANIQEYYSKRDEQDAKATLESEEVDLNAGLHGN
WTLDNAKARLNQFFQKEKNQTDYKYSQVGPDHNRSFIAEMTILVRQLGRKVIAREHGSTK
KLAAQSCALSIVRQLYHLGVIEAYTGQTKKKEGEIVDVYEVNLSDDVQQQIRSIVQELGI
QIPSPPQDSNSPVSLVQGKMAQFEPSQRQSIAGVVPWSPPQVNWNPWTSSNIDEGPLAFC
TPEQISTDLQHELNYQLEQDKNLQTILMERSQLPVKNFKEQIMSTIHKNPVVIIRGATGC
GKTTQVPQYILDEFVQAGRASECNIVVTQPRRISAVSVSERVSFERGEEVGKSCGYSVRF
ESVLPRPHASILFCTVGVLLRKLESGIRGISHVIVDEIHERDLNTDFLLVVLRDVVQAYP
DVRIILMSATIDTSMFREYFFNCPVIEVHGRAHSVQEYFLEDCIQMTQFVPPPMDRKKKD
KDEDGGEEDVNCNVICGSEYTAETKRAMSQLNEKETPFELIEALLKYIETLEVPGAVLVF
LPGWNLIYSMQKYLEMNPHFGGHQYRILPLHSQIPREEQRRVFEPTPEGVTKVILSTNIA
ETSITINDVVFVLDSCKQKVKLFTSHNNMTNYATVWASKTNLEQRKGRAGRVRPGFCFYL
CSRARFEKLETHMTPEIFRTPLHEVALSIKLLRLGAIGNFLSKAIEPPPLDAVIEAEHTL
RELDALDCNDELTPLGRILAKLPIEPRLGKMMIIGCIFNVGDALCTISAAACFPEPFINE
GKRLGFVHRNFAGSRFSDHVALLSVFQAWDEVRMGGEDAEIRFCEHKRLNMPTLRMTWEA
KVQLKDILVNAGFPEECLLNQVFNTVGPDNNLDVVISLLTFGSYPNVCYHKEKRKVLTTE
GRNALIHKSSVNCPFSNHDMVYPSPFFVFGEKIRTRAISAKGMTLVSPLQLILFGSKKIT
SNGEVVELDDWIKLKIPHDVAGGVAALRAVMEALVVEVTKDPEYIRNLDPTNERLLNVIR
LVSRPSSAGINLMTSNPRFGDGPRPPKMARTDFGGGGEFRGRGGGGYRGGGGSWSGGGYQ
GGGGGFRGSGGYRGGGGGYRGSNGGGGYRGGGGGGYGGRGFRGGWGGNRGGY
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atgacggacattaagagcatcctgtacgcttggtgtggaaaaaagaagctaacgccgagc
tatgacatccgagcagctggaaataaaaacagacagaaattcttgtgtgaggtgcgtgtt
gaaagttacagttacattggcatgggtaattctgccaacaagaaggatgctcagtccaat
gcagcccgagattttgtgaattatcttgttcggatgaaagaaatgagtcctggcgaagtt
cctgctctaggggtcagcgtacctgatggagggaatgaagaaggtggtgggtttggaaat
ctcccatccaactgtccactacctccacatctgactgtgaagaaggaatcagatagcgaa
gcttctgagagttctgcacctgtccctggagtcacaggtttgggctattctggttttggt
aacgcccaatgggagcgaggagccaacatccaggagtattattccaagagagatgaacag
gatgcaaaagcgaccttagaatctgaggaagttgatctaaatgctggcttgcatgggaac
tggactctggacaatgcaaaagctcgtttgaaccagttctttcagaaggagaagaaccaa
accgactacaagtacagccaggtggggcctgaccacaacaggagttttattgctgagatg
acaatcttagtaagacagctgggtaggaaggttattgctcgtgagcatggctctacgaag
aagctggccgcccagtcttgtgcgctgtctattgtccgtcagctttaccatttgggggtc
atagaagcctacacaggacagaccaagaagaaagaaggagagattgtggatgtatatgaa
gtgaatctcagtgatgatgtacagcagcaaatacgcagtattgtgcaggaacttggcatc
cagatcccttctcctcctcaggactccaacagtccggtatctctggtgcaaggaaagatg
gctcagtttgagccctcacagaggcagagcatagcaggagtggtgccgtggtctccacca
caggtcaactggaacccctggaccagctccaacattgacgaaggaccgctggcattttgt
accccagaacagatcagcacagacctgcagcatgagctcaactatcagcttgaacaggac
aaaaatctgcagacgattctcatggagcgaagtcagctaccagtcaagaacttcaaggag
caaatcatgtccaccattcacaaaaacccagtggtcattattcgtggagccactggctgt
ggaaagaccactcaggttcctcagtacatcttggatgagttcgtacaggcaggcagggca
tctgagtgcaatatcgttgttacgcagccaagacggatcagtgctgtgtcagtatctgag
cgtgtatcattcgagagaggagaggaggtggggaaaagctgtggctacagtgtgcgcttt
gagtctgtcctgcccagacctcacgccagcatcctcttctgcacagttggggtgttgctg
aggaagctggaatctggtatccgtggcataagtcatgtgattgtggatgaaatccatgag
agggacttaaatactgatttcctgttggtagtgttgagagatgtggtccaggcttaccct
gatgtgcgcatcatcctcatgtctgccaccattgacaccagcatgtttagggaatacttt
tttaactgtcctgtcattgaggtgcatggacgtgcacattctgtgcaagagtatttccta
gaagactgcatacagatgactcagttcgtaccaccaccaatggaccggaagaaaaaggat
aaagatgaagatggtggagaggaagatgtgaactgtaatgtcatctgtggatctgagtat
actgctgaaaccaagcgtgccatgtctcagttgaatgagaaggaaactcctttcgagctg
attgaggctttgctgaagtacattgaaacgctggaagtaccaggggctgtgctagtcttc
ctgccaggctggaacctcatctattccatgcagaaatacctggagatgaacccacacttc
ggtggtcatcaataccgaatcctgccccttcactctcagatccccagggaagaacagaga
cgagtgtttgagccaactcctgagggtgtgactaaggtcattttgtccaccaatatcgct
gagaccagcattactatcaacgatgtggtctttgtcctcgactcctgcaagcagaaagtg
aagttgttcacttctcacaacaacatgacaaactatgccacagtgtgggcctccaagacc
aaccttgagcagaggaagggacgagctggcagagtcagaccaggcttctgcttttacctg
tgtagcagagctcgctttgaaaagctggagacccatatgactcctgaaatcttccgcacg
ccactgcatgaagtggccctcagcattaagctgctgagactgggtgccatcgggaatttc
ttgtccaaagccattgagccgcctccattggatgccgttattgaagctgaacatacactg
agagagctggatgctctagactgtaatgatgagctgactccactgggacgcattctggcc
aaactgcccatcgaaccacgtctgggaaagatgatgatcataggatgcatctttaatgtt
ggagatgccttgtgcactatctcagcagcagcctgtttccctgagcccttcatcaacgag
ggcaaacgcctcggctttgttcataggaactttgcgggctcacgtttctcagatcacgtt
gccttactctctgtcttccaggcctgggatgaagtccggatgggaggtgaggatgcagag
atccggttttgtgagcacaagaggctgaacatgcccactttgaggatgacttgggaggcc
aaggtccagctgaaagatattcttgtcaatgccggcttccctgaagagtgcctcctgaat
caggtgtttaacactgtgggaccagacaataacttggatgtggtgatctctctgctgacg
tttggctcttatcccaatgtgtgttaccacaaagagaaaaggaaggtcctgaccacagag
gggcgaaatgctctcattcacaaatcctcagtcaactgtcctttcagcaaccacgatatg
gtgtatccatctcctttttttgtctttggggaaaagatccgaactcgggccatttctgcc
aaaggaatgactcttgtcagtcctcttcagcttattctgttcggctcaaagaagatcacc
tccaatggagaagttgttgagcttgatgactggatcaagttaaagattccccatgatgta
gccggtggtgtggcggccctgagagcagtgatggaagccctggtggtggaggtgaccaaa
gacccagaatacatcagaaatttggatcccaccaatgagcgtttgctgaacgtcattcgg
cttgtgtctagaccctcatcagcgggcatcaaccttatgacctccaacccacgctttgga
gatggtcctcgtccacccaagatggcacgtactgactttggtgggggtggagagttcagg
ggccgtggaggaggtggatacagaggtggtggtggatcctggtctggtggaggataccag
ggtggtggaggcggcttcagagggtctggagggtatcgtggaggtgggggtggatacagg
ggatctaatgggggtggaggatacagaggaggtggaggaggaggatatggagggagggga
ttcagaggtggctgggggggaaacaggggtggttattaa
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