Cyprinus carpio (common carp): 109059892
Help
Entry
109059892 CDS
T05134
Symbol
slit1b
Name
(RefSeq) LOW QUALITY PROTEIN: slit homolog 1b
KO
K06838
slit 1
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccar00536
]
109059892 (slit1b)
Glycosaminoglycan binding proteins [BR:
ccar00536
]
Heparan sulfate / Heparin
Axon guidance molecules
109059892 (slit1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
LRR_1
LRRCT
hEGF
LRR_9
EGF_TEN
LRRNT
EGF_2
EGF_3
EGF_CA
Motif
Other DBs
NCBI-GeneID:
109059892
NCBI-ProteinID:
XP_042568092
UniProt:
A0A9Q9VN57
LinkDB
All DBs
Position
A22:complement(18273192..18311420)
Genome browser
AA seq
1538 aa
AA seq
DB search
MTVRTGCLNVELMLPSCGLWIWGLLSVLLLAGQSEACPPHCSCTGTAVDCHGLAFKNMPR
NIPKNTERLDLNSNNLTHIGKDDFAGLKHLRILHLMDNQIVTIDRGAFSDLKELDRLRLN
RNRLQQLPELLFLKNPALSRLDLSENAIQMIPRRAFRGATNIKNLQLDKNHISCIEDGAF
RAMRVLEVLTLNNNNISTITISSFNHMPKLRTFRLHSNSLRCDCHLSWLSQWLRQRATLG
LYTQCSAPPNLHGLNLAELQKKDFTCSGVFDSGPQPCGLASGSCPPMCSCTNNIVDCRGK
GLTAIPANMPEGMTEIRLEQNGIKSVPPGAFASYKRLRRIDLSNNQISEIAPDAFQGLRS
LNSLXVCIYNPFTLIVPQTLYDKIVLLEMLILLNANKIHCVRINVFQDLENLSLLSLYDN
KIQTLAKGTFTPLKSIQTLHLAQNPFVCDCGLKWLADFLRSNPIETSGARCSSPRRLANK
RISQIKSKKFRCSAKEQYHIPGSEDTRLNKDCNSKPVCPPKCRCETTVVDCSNLCLTKFP
EHLPISTTELRLNNNDLSILEATGLFRSLTHLKKINLSNNKITEIEDGAFDGASSVIELH
LTANHLVSIRGGMFRGMDGLRMLMLRNNRIRCIHNSSFSGLQNVRLLSLYDNQLTTIMPG
AFDTLPNLSTLNLLANPFNCDCRLSWLGEWLRSRQIVTGNPRCQNPAFLREIPLQDVAKP
DFLCDKALIEDDVSCVPKPACPEQCRCLDTVVRCSNKHLLALPRGVPHNVTELYLDGNLF
VAVPKELSAFRQLQLVDLSNNKISFLSNSSFANMSQLTTLILSYNALHCIPPLVFGGLSS
LRLLSLHGNNISELHQEVFRDAASLSHLAIGANPLYCDCGLRWLSDWVKSGYKEPGIARC
AAPQGMEGKLLLTTPGNSFQCTGPVDPSVSEKCSPCSSSPCQNQGLCHSDPVLQYKCSCP
QGYKGRNCEVSVSACEGGPCVNGGTCHSDKDRKGFSCWCPVGFAGQLCELDVDDCVENEC
ENGTICVDGVGNYSCVCPRPFSGQKCEEYEEDLCYPGQNPCHRGSTCIPTVTGPKCICPP
GFVGDDCSVDYNECEGHYCQNGARCVDHVAGYTCVCPQGYSGRLCEVSLRAPAGCELLLC
ENGAPCVESDGTAACQCLSGFGGPRCEKLLSVNFIDRDSYLLLTDVKNRPQTNITLQVST
AEENGILLYNGVNDHIAVELHAGRVKVTYDAGDPPGSTIYSSEIVNDGRFHTLELLTYER
MVNLSVDGGLPMTLDSSGHVQTLTRDAPLYVGGMPENAQSLSFNQWPPLNGSSFQGCIRN
LYINNELQDFTHTQMKPGVVPGCRACQELRCVNGLCQPDAAAGPVCHCQPGWAGKHCDAA
ATNPCQKNKCCVHGTCVPVDLQSYRCQCADGGPLCAQEDVSGPCVALSCQHGFCEVSPTG
QAQCVCDSGYSGQLCDTVAPCQGESVRDFHRVRRGEVQCRSTQPLSWVECRGGCRPDSGA
CCGGSRVRRRRYSFECDDGSSFTQEVEKTVECSCGKCV
NT seq
4617 nt
NT seq
+upstream
nt +downstream
nt
atgacggtcaggactggctgtctgaatgttgagctgatgcttcccagctgtggtttgtgg
atttggggtttgttgagcgtccttctgctggcgggtcagtccgaagcgtgtcctcctcac
tgttcctgcacaggcaccgctgtggactgccatggacttgccttcaaaaacatgccacga
aatataccaaagaacacagaacgactggacttgaactcaaacaacctcacacatattggc
aaggatgactttgctggccttaagcacctccgaattttgcacctcatggataaccagatt
gtcactattgatagaggagccttcagtgacctgaaggagttggacagactgcgtctcaac
cgaaaccgtctccagcaactcccagagctcctgttcctgaaaaatcccgctctttccaga
ctggacttaagtgaaaatgccatccagatgatacctagaagagcatttagaggagccacg
aacatcaagaacttacagctggataagaatcacatcagctgcattgaggacggagcgttt
cgtgcaatgagagtcctggaggtcctcacactgaacaacaataatatcagcaccatcacc
atttccagcttcaatcacatgcccaagttacgtaccttccggctgcactctaacagtctg
cggtgtgactgtcatttgtcatggctgtctcagtggctcagacagagagcgacgctggga
ctttacactcagtgcagtgcaccacccaacctacacggcctcaacctggccgaactgcag
aagaaagacttcacatgctccggtgtttttgattccggtcctcagccctgtggtcttgcg
tctggttcctgtccgccgatgtgctcctgcacaaacaatatcgtggactgcagaggaaaa
ggtctgacggcaattccagccaacatgcctgaaggcatgactgagatacgactggagcag
aacggtataaagtctgttcctccaggagcgttcgcctcctacaagagactgcgcagaatt
gatttgagtaataaccaaatatctgaaatcgcccccgatgcgtttcaaggcctgcgctca
ctcaactcactgtaagtgtgcatttataatccattcactctcattgtgcctcagacattg
tacgataaaatcgttctgctagaaatgttgatactattaaatgccaataaaatccactgt
gttcgcatcaacgtcttccaggatcttgagaacctgtctctattgtctctgtacgacaat
aagatccagactctagccaaaggcacatttactccgctgaaatctatccagactcttcac
ttagctcagaacccattcgtctgtgactgtggtttgaagtggctggcggactttttgcgc
tccaacccaattgagaccagtggcgcacgatgctccagtcctcgacggcttgccaacaaa
cgcatcagtcagatcaagagcaagaagttccgctgttcggccaaggaacagtaccacatt
ccaggctcagaagacacgcgtttgaataaggactgtaacagcaagcctgtttgtccaccc
aaatgtcgctgtgaaactactgtggtggactgctcaaatttatgcctaaccaagttccca
gagcaccttccgatatctacaactgaactacgtctcaataacaatgacttgtcaatcctg
gaggcaacaggactctttcggtccctcacacatctcaagaaaataaaccttagcaacaat
aaaatcactgagattgaggatggagcttttgatggtgcgtcgtctgtaattgaacttcac
ctgaccgccaaccacctggtgtctatacgtggaggaatgttccggggaatggacggatta
cgcatgctgatgctgaggaataatcgcatccgttgcatccacaacagcagcttctcaggc
ctgcagaacgtacgtctgctctcgctctacgacaaccagcttaccaccatcatgcccgga
gccttcgacacgctgccaaacctctccaccctaaaccttctggcaaaccctttcaactgt
gattgtcgtctgtcctggttgggcgagtggctgcgatctcggcagatcgtgacgggaaac
cctcgctgtcagaacccagcattcctcagagagatcccactgcaggacgtggcaaagccg
gacttcctctgtgacaaggctctgattgaagacgatgtgagttgtgtgcctaagccggcg
tgtcctgagcagtgcaggtgtctggatacagtggtgcgctgcagcaacaagcacctgttg
gctttaccccgcggcgtcccacacaatgtcactgaactatacctggatgggaatctgttt
gttgcggtgcctaaagagctctcagcattcagacagctgcaactggttgacttgagcaac
aataaaatcagtttcttgtccaactcttcttttgccaacatgagtcagctaaccacactg
atcttgagttataacgcgctgcactgtattcctcctctggtgtttggaggcctgtcctct
ctccgtctgctatctctccatggcaacaatatttctgaattacaccaggaagtcttcaga
gacgcagcgtctctctcgcacctggcgatcggcgcaaacccgctgtactgtgactgtggc
ctgcgctggctctcagactgggtgaagagcggctacaaggagcccgggatcgcccgctgc
gccgcgccgcagggtatggagggaaaactgctgctcacaacgccaggcaacagcttccag
tgcacaggtcctgtggatccgtccgtgtctgagaaatgcagcccgtgttcgtcgagcccc
tgccagaatcaaggcctgtgccacagcgaccccgtccttcagtacaagtgcagctgtccg
cagggttacaaggggagaaactgtgaggtgtctgtcagcgcttgtgaaggcggtccatgt
gtgaacggaggaacctgtcacagcgacaaggatagaaaaggcttcagctgctggtgtcct
gtgggcttcgccggtcagctctgtgagctggatgttgatgactgtgtggagaacgagtgt
gagaatggcaccatctgtgtggacggagtgggaaactacagctgcgtctgcccgcgcccc
ttctcaggccagaagtgtgaagagtacgaggaggatctgtgttatcccggtcagaatccc
tgtcatcgtgggtccacctgcatacccaccgtcaccggaccgaaatgcatctgtccgccg
ggtttcgtgggtgacgactgcagtgtggattataatgaatgtgagggacattactgtcag
aacggagcgcgctgtgtggatcacgtggcgggatacacatgcgtctgtcctcagggctac
agcggtcggctgtgtgaagtgtctctccgggctcctgccggctgtgagttgttgctctgt
gagaatggcgccccctgtgtggagagcgacggtactgcagcgtgccagtgtctgtccggg
ttcggcgggccgcgctgcgaaaagctcctcagtgtcaacttcatcgacagagactcttac
ctgctgctcaccgacgtcaaaaaccggccacagaccaacatcacgcttcaggtctccaca
gctgaagaaaatgggattcttctctacaacggcgtcaatgaccacatcgctgtagagtta
cacgccggccgtgtcaaagtgacctacgacgcaggagatccgccgggcagcaccatttac
agttctgaaatagtgaacgacggacgctttcacaccctcgagctgctgacttatgagcgg
atggtcaacctttctgtggacggagggcttcctatgactctggacagctcgggacacgtc
cagaccctcaccagagacgccccactatacgtcgggggtatgcctgaaaacgcccagtcg
ctgtctttcaaccagtggccgcctctcaacggctccagttttcaaggctgcatccgaaac
ctctacatcaataatgaactgcaggacttcacgcacacgcagatgaagccgggagtggtg
ccgggctgccgggcctgtcaggagctgcgctgcgtgaacggactgtgtcagccggacgcc
gccgccgggcccgtgtgccactgtcagccgggatgggccggcaaacactgtgatgcagcc
gctaccaacccctgccagaaaaacaagtgttgtgttcacggcacctgtgtcccagtggac
ctgcagtcgtatcgctgccagtgtgcggacggggggcccctgtgcgctcaagaggacgtg
tccggcccctgtgtggcgctctcatgccagcacggcttctgcgaggtatcaccgacggga
caggcgcagtgcgtttgtgacagcggctacagcggccagttatgtgacacagtggctccg
tgtcagggcgagtccgtacgggacttccatcgcgtgcggcgcggcgaggtccagtgtcgc
agcacacagccgctgtcctgggtggagtgtcgcggcggctgcaggccggattcgggcgca
tgctgcggcggctccagagtacgacgcagacgctatagtttcgagtgtgacgacggcagt
tccttcacacaggaagtagaaaagacggtcgaatgcagctgtggaaagtgtgtgtag
DBGET
integrated database retrieval system
