KEGG   Cyprinus carpio (common carp): 109065003
Entry
109065003         CDS       T05134                                 
Name
(RefSeq) TNF receptor-associated factor 2-like
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar04010  MAPK signaling pathway
ccar04137  Mitophagy - animal
ccar04141  Protein processing in endoplasmic reticulum
ccar04210  Apoptosis
ccar04217  Necroptosis
ccar04621  NOD-like receptor signaling pathway
ccar04622  RIG-I-like receptor signaling pathway
ccar04920  Adipocytokine signaling pathway
ccar05132  Salmonella infection
ccar05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    109065003
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    109065003
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    109065003
  09143 Cell growth and death
   04210 Apoptosis
    109065003
   04217 Necroptosis
    109065003
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    109065003
   04622 RIG-I-like receptor signaling pathway
    109065003
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    109065003
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    109065003
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    109065003
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccar03019]
    109065003
   04121 Ubiquitin system [BR:ccar04121]
    109065003
Enzymes [BR:ccar01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     109065003
Messenger RNA biogenesis [BR:ccar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     109065003
Ubiquitin system [BR:ccar04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    109065003
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF2_zf zf-C3HC4 TRAF3_RING ADIP zf-C3HC4_2 zf-RING_5 zf-C3HC4_4 zf-RING_UBOX zf-C3HC4_5 TMF_DNA_bd zf-RING_6
Other DBs
NCBI-GeneID: 109065003
NCBI-ProteinID: XP_042580991
Ensembl: ENSCCRG00000030556
UniProt: A0A8C1L540
LinkDB
Position
B5:complement(24798770..24824321)
AA seq 536 aa
MISTAGTVGKWKAMARPSLPSSLDSTLPGISREVLSVSMEPKYQCQQCKEILRKPFQAQC
GHRFCVFCFKQLTSSGPIPCEACRAEGIFEEATSVLNIEVAFPDNAARREIDSLPAKCPN
DGCSWSGTLKEYEGQHEGRCDFERVKCEACQALILVSEKDRHNERECEARTLNCKYCKVT
FNFKEIKAHDEICQKFPMQCKDCGKKKIPREKFQEHIKSCAKSKSACQFSEIGCRAVVDN
GKQQEHEQTSVTEHLRLMLAVLSSVRLRTERTGEWHEDSGLGLYRGPEDASPAGAHAAGH
NAGRGGGPGVQQKVTALENIVCVLNREVERSALTLEALSRQHRLDQEKIENLSNKVRQLE
RTLTMRDLQLAESEQSLRELQFCTYDGVFIWKIADFSRRRQDAVGGRAPAMFSPAFYSSK
YGYKMCLRLYLNGDGTGRGTHLSLFFVVMRGKYDALLKWPFSQKVTLMLLDQNNREHIID
AFRPDVSSTSFQRPISEMNIASGCPLFCPLAKLAGKSSYLRDDTIFIKAIVDLTGL
NT seq 1611 nt   +upstreamnt  +downstreamnt
atgatcagcactgctggcactgtgggtaaatggaaggcaatggcacgtccatctttacct
tcttcattggactccacattacctgggatatctcgagaagtgctgtctgtgtccatggaa
ccaaaatatcaatgtcaacagtgcaaagagattcttaggaaacctttccaagcacagtgt
ggacatcgcttctgtgtgttctgtttcaaacaactcaccagctcggggcccataccctgc
gaagcctgtcgtgctgaaggtatatttgaagaggcaacatctgtgctcaatattgaagtg
gcgtttcctgataatgcggcacgaagggaaattgatagcttgccagccaaatgcccaaat
gatggatgtagttggtctggaacactgaaagagtatgagggtcagcatgaaggtcgttgt
gactttgaacgtgtaaaatgtgaagcatgtcaagcactcatcttggtcagtgagaaagac
cgccacaatgagcgggaatgcgaggccagaaccctgaactgcaaatactgcaaggtcaca
ttcaacttcaaagaaattaaggcccatgacgaaatatgtcagaaattccccatgcaatgc
aaagactgtggtaaaaagaaaatccccagagaaaagtttcaagagcacatcaagtcttgt
gcaaagtctaagtcggcgtgccagttcagtgaaattggctgcagggctgtggttgacaat
ggtaagcagcaggagcatgagcagaccagcgtgacggaacatttgcgtctcatgctagcc
gtactgtcctctgtgcgcctgcggaccgagaggactggagagtggcatgaagattccgga
ctgggattgtatcgcggacctgaagacgcatctccagcgggggctcatgctgctggccat
aatgcaggaagaggaggcggccctggtgtacagcagaaagtcacagcattggagaacata
gtgtgtgtgttgaacagggaagtggagcgctcagctctcaccctggaggcactatcccgt
caacatcggttagaccaggaaaagatagagaacctgtcaaacaaggtgcgacagctagaa
cggactttaaccatgcgagatctgcagttagcagaatccgagcagtccttgcgggagctg
cagttttgtacatacgatggagttttcatttggaaaattgcagacttctctcgtcgcagg
caagacgcagtgggcggccgggcacctgccatgttctcacctgcgttctactccagtaaa
tatgggtataagatgtgtctgagactctacctgaacggtgacggcacaggccggggcact
catctttctctgttctttgtggttatgaggggcaaatatgatgcattgctgaagtggccc
tttagccagaaggtgacattgatgttgttggaccagaacaacagagagcacatcatcgat
gcctttaggcctgacgtgagctccacatccttccagagacccatcagtgagatgaacata
gccagtggttgtcctctcttctgccctctagccaagctggcaggcaaaagctcatatctg
agagatgacaccatatttattaaagccatagtcgacctcaccggcttataa

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