Cyprinus carpio (common carp): 109090840
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Entry
109090840 CDS
T05134
Name
(RefSeq) telomerase-binding protein EST1A-like isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109090840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109090840
03032 DNA replication proteins [BR:
ccar03032
]
109090840
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
109090840
mRNA cycle factors
Common to processing body (P body) and stress granule
109090840
DNA replication proteins [BR:
ccar03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
109090840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
109090840
NCBI-ProteinID:
XP_042588870
Ensembl:
ENSCCRG00000007913
UniProt:
A0A9Q9WSN9
LinkDB
All DBs
Position
B10:complement(16850031..16881973)
Genome browser
AA seq
1609 aa
AA seq
DB search
MSPPSVKRKCTAFISYTFNIFRHSILIETASPCSTGNCLEKKEQSLALHIRMNHLAIRGQ
TESSGKHQREIIVYSELREEGKKHRERDGKRPDLQWYKPGAAHPRRRKNSAEGAGSDPMH
PPDDCVFGNDTKMPDGSPTSPGSPHVSTGEFPTDHSQPEANHNTKGHVGNKNHQLVGGNA
VKSIEGAGTPKSPKQSQKMRKPDREIYQPGGRRSQVHKETRVSKELDGDRRRDEQEVSGK
SAEMIIKCEKEEKRRNKRGKDGRKKQESKGTVDSSSANKNENNVESITGKVSNLHLESEE
SKDGAGQDVTHQRKPSGEGRRSQAGGGNEVTGEDKKKERGNGKSRAGREKGNNQGFAKKE
PGEGGGKGSEADQPEGKKQRNVGGKEVSRDQNMNHEKPQGNRLKEKGKPSERTDSNGVNS
ASKRYSQSDIRRPRNRTYSTSSASSGTSMDGLAEAERLRGEAQQLAARTAEKTAGQKEFI
RRSQGRPRRRMARTLSSTDSLEENEVWEREDRRGRVADEAKSTHKGPEGGRRGQRVPVSS
GRGGILRVSLDKNSSEEQASRKNPRGRGRGILVLPAHTDLTLTPEPGPQLGAMRGGMGLG
RGRGGRGGGTRRLWDPNNPDKKPALVSSQQSQHASLQQALYLQQGGCGPLNFLDTDDETT
GSPPVRQGEFFQNQQAAAMAYYKFQNSDNPYCYPLSANSPNTPPRYPYPYHIPYQIPSSN
GMYPTTMPPFYGPYGQSGPGYPSPAGSGLTPEEAEVQTRGELGKLLRLADSQELQLSNLL
SRERLSQEGLERMAQLRAELLTLYERVILTDIEFSDSQNLDQALWKNVFYQVIERFRQLL
KDQTSDAAPQIKTMLMTILEEGALFFDSLLQKLQTVFQFKLEDYMDCMAIRARPLRKTVK
YALISAQRCMICQGDIARYREQASDSANYGKARSWYLKAQQIAPKNGRPYNQLALLAVYT
KRKLDAVYYYMRSLAASNPILTAKESLMTLFEEAKRKADQIKLRQKQEDGGTRGPRGHVG
GRRGEDTTRVEIWIRPTGHPGTSRLTGSESGKDSEQDGELGTLSPSDLNKRFILSFLHAH
GKLFTKVGMESFPAVASRVLQEFRALLQHTPSPLGSIRMLQIITINMFTIHYAQIRAEGQ
GETRSVLEEQTISLGLAMFGLLVQRCTELLKETPAEPIPAEELGEFDEMDDEEGMVRVSV
FPPDLRELLPSMKVWSDWMLGHPDKWNPPPCSIQGGPDVWQCLADLCNSLARVYHGEVLL
YKADVDGEGDEELRVLQLEEDKMLSGFVPLLAAPQEACYIDQGTDAAIAADCKRVTVLKY
FLEALCGQEEPLLAFKGGKYISMATPPTSSVNTENKAQTQEQEDDVIVEESSLSASEGEI
DGEMEGDGSEDDIRELRARRHALAHKLAQQQKRRDKIQAVLQTDGQLEIEVRPFYLVPDT
NGFIDHLDGLRKLLACGTYILVLPLIVITELDGLAKGQDSREGVGNGAHARQVQERARSA
VMFLEKAFESRDPCIRALTSRGNTLESIAFRSEDTSGQKGNNDDVILSCCLHYCQDKAKD
FMPAEKNGPVRLRREVVLLTDDRNLRVKALTRNVPVRDIPAFLIWAKVG
NT seq
4830 nt
NT seq
+upstream
nt +downstream
nt
atgtcaccgccatcggtaaaaagaaaatgtacggctttcatcagttacacattcaacata
ttccgtcactctatcctaattgaaactgcttctccctgttccacaggaaattgcttggaa
aaaaaggagcagtcattggcactccacattagaatgaatcacttggccatcaggggacaa
actgaatcatcaggaaaacatcagagagaaataattgtatattctgaattgcgagaggag
ggtaagaagcaccgggaacgagacggcaaacgtccagacttgcagtggtacaaacctggt
gctgcccatccacgcagacgtaagaacagcgcagaaggagccggctcagaccccatgcac
ccaccggacgattgtgtttttggtaatgacaccaaaatgcctgacggctcacctaccagt
cctggaagccctcatgtaagcactggagagtttccaactgatcacagccagcctgaagca
aatcataacactaaaggacatgtaggcaataaaaaccaccaacttgtgggtggaaatgct
gttaaaagcattgaaggtgctggtacacccaaatcaccgaagcagtcacaaaagatgcgt
aaacctgaccgtgagatatatcagccaggggggcgaaggtctcaagtacacaaagagacc
agggtgagcaaagaattagatggggatcgaaggagagatgagcaagaagtgagtgggaaa
tctgctgaaatgattattaagtgtgagaaagaggaaaagcgtagaaacaagcgagggaaa
gatggcaggaaaaagcaagagtcaaagggaactgtagacagttcctctgcaaacaaaaat
gaaaataatgtagagagtatcacgggtaaagtcagcaatctccatttagagtctgaggaa
agcaaagatggagctgggcaggatgttacacaccagagaaaacctagtggggaagggcga
agaagccaagcaggtggagggaatgaagtgactggagaagacaaaaaaaaggagaggggt
aatggcaaatccagagcaggaagggaaaaaggtaacaaccagggctttgccaagaaagag
ccaggggaaggaggaggaaaaggctcagaagcagatcagcctgaaggaaaaaagcagaga
aatgttggcggaaaagaggtgagccgtgaccagaacatgaaccatgaaaaaccacaaggg
aacaggctaaaagagaaaggaaaaccatctgagagaaccgattcaaacggagtcaactct
gcctcaaagcgatactctcagtcagacatccggcgtcctcgaaaccgcacctacagcacg
agttcggccagtagtgggaccagtatggacggtctggctgaagctgagagacttagaggg
gaggctcagcagctggcggcacgcactgcggaaaagactgctggacagaaggagttcatc
cgaagaagccagggccgcccgaggagacggatggcacggacattgtcttccacagattcg
ctggaggaaaatgaggtgtgggagagagaagatagaagaggcagagttgctgacgaagcc
aagagcacccacaaaggtcccgaagggggcagaagagggcaaagagtgccagtatctagc
ggtcgaggaggaattttgagagtttctttggacaagaattcaagcgaggagcaagcaagc
cgaaaaaaccccagaggtcgtggtaggggcatcctggtgcttcctgcccacactgatctt
actttgaccccagagccagggcctcagcttggagcaatgagaggaggaatgggtcttggc
cgaggaagaggcggccgtggaggagggacaagacgcctttgggacccaaataacccggat
aagaaaccagcactggtgtcaagccaacaatcccagcatgcatctctccagcaggctttg
tacttgcagcagggtggatgcgggccactgaactttctggacactgatgacgagaccaca
ggaagtcctcctgtccgacagggcgagtttttccaaaaccagcaagccgctgccatggct
tactacaaattccagaattccgacaatccctactgctatccgctatcggccaattcccca
aacaccccaccacgctatccttacccatatcacattccctaccaaattcctagctccaat
gggatgtatcccaccactatgccacctttttatggaccctacgggcaaagtgggccaggt
tatccctctccagctggatctggtctcactccagaagaggcagaggtgcagaccagagga
gagctgggaaagttgcttcggctggctgacagtcaggaactccaactcagtaacctgctg
tcccgggaaagactgagccaggagggattagagaggatggcccagctcagagctgaactc
ctgacattgtatgagcgggtgattttgacagacatagagttctcagactctcaaaacctg
gatcaggctctgtggaagaatgtgttttaccaggtgatagagcggtttaggcagctactg
aaggaccagacatcagatgcagccccacagataaaaaccatgctcatgaccatactggaa
gagggggcattattttttgattcgctgctacagaagttgcagactgtttttcagttcaag
ctggaggactatatggactgtatggctatacgagcaagacctctacgcaagacggtgaag
tatgctctgatcagtgcccagcgctgcatgatctgtcagggggatatcgcacgataccgt
gaacaggctagtgactctgctaactacgggaaggcacgcagctggtatctaaaagctcag
cagattgctccaaaaaatggaagaccctacaatcagctggccctgctagcagtatatacg
aagcgaaagctggatgctgtatactattacatgcgtagtctagccgccagtaacccaatc
ctcacagccaaggagagtctgatgacgctgttcgaggaagccaagcgcaaggctgaccag
attaaacttagacagaagcaagaagatggaggtacccgtggtccccgaggtcatgtaggt
gggcgtcgtggtgaggacaccacccgagtggagatctggatacgtcccaccgggcatccg
ggcacttctcgtctgacaggcagtgaatcgggcaaagactctgagcaggacggagagctg
ggaactctgagtcccagtgatctcaacaagaggtttattttgagtttcctgcatgctcat
ggaaagctcttcactaaagtagggatggagagttttcctgctgtagccagtcgagtgttg
caggagtttcgggccctcctccaacacaccccctcccccctcggtagcatacgcatgcta
caaatcatcactattaacatgttcaccatccattatgcacagatcagagctgaagggcaa
ggtgaaactcggtctgtgttagaggagcagaccatatctcttggtttagctatgtttggt
ctccttgtgcaacgttgcactgaactcctaaaagaaacacctgctgagcctatcccagca
gaagagctgggggagtttgatgaaatggacgatgaggaggggatggtgcgggtgtctgtc
ttccctcccgacctcagagagctgctgcccagcatgaaggtctggtccgattggatgctc
ggccacccagacaagtggaaccctcctccctgcagtattcaggggggtccagatgtgtgg
cagtgtcttgcagatctgtgcaactctttggcccgtgtgtatcacggtgaggttctgctc
tacaaagctgatgtagatggagaaggagacgaggaactcagagtcctacagttggaggag
gacaaaatgctctctggctttgtcccactgctcgctgccccacaggaagcttgctatata
gaccaaggaactgatgcggctatagcagcggactgtaagagagtgactgttctgaagtac
ttcctggaagctttgtgcgggcaggaagagccgctgctggcttttaagggaggaaagtac
atttccatggcaacacctcctacatccagcgtaaacacagagaacaaagcgcaaacgcaa
gaacaggaggatgatgtcattgtggaggaatcgtctctctctgcatcggaaggggagatc
gatggagagatggaaggagacggaagtgaggatgatatcagagagctgagggcacggcgc
cacgctctcgcacacaagctggcacagcagcagaaacggcgggacaagatacaggctgtt
ctgcagacggatggacagctggagattgaggtcaggccgttctatctggtcccggacaca
aacggcttcatagatcatctggatggactgaggaagcttctggcctgtgggacatacatc
ctggttctgcctcttattgtgatcacggagttggatggtctggctaaagggcaggacagt
cgtgagggggtcggtaatggtgcccatgcccgacaggtgcaggagagagccagatcagcg
gtcatgtttctggagaaagcatttgaatctagagatccctgcatcagagcgctcaccagc
agaggaaacacactggagtccatcgccttccgcagtgaggacacttcaggacaaaagggc
aacaacgatgatgtcatcctgtcctgctgtctgcactactgtcaggacaaagccaaggac
ttcatgcctgctgagaaaaatgggccagtgaggttacgcagggaggtggtcttgctcacg
gatgaccgcaatctgcgagtcaaagctcttacacgcaacgtaccggtccgggacatccca
gcattcctgatctgggctaaagtaggctga
DBGET
integrated database retrieval system
