Cyprinus carpio (common carp): 109093401
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Entry
109093401 CDS
T05134
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04010
MAPK signaling pathway
ccar04120
Ubiquitin mediated proteolysis
ccar04140
Autophagy - animal
ccar04144
Endocytosis
ccar04620
Toll-like receptor signaling pathway
ccar04621
NOD-like receptor signaling pathway
ccar04622
RIG-I-like receptor signaling pathway
ccar05132
Salmonella infection
ccar05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109093401
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
109093401
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
109093401
04140 Autophagy - animal
109093401
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
109093401
04621 NOD-like receptor signaling pathway
109093401
04622 RIG-I-like receptor signaling pathway
109093401
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
109093401
09171 Infectious disease: bacterial
05132 Salmonella infection
109093401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccar04131
]
109093401
04121 Ubiquitin system [BR:
ccar04121
]
109093401
Enzymes [BR:
ccar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109093401
Membrane trafficking [BR:
ccar04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
109093401
Ubiquitin system [BR:
ccar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
109093401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
zf-C3HC4_4
zf-RING_5
zf-TRAF_2
TRAF3_RING
DM
TRAF6_Z2
Sina_ZnF
RING_XB3-XBAT31
U-box
DUF4472
FrsA-like
ATG16
Motif
Other DBs
NCBI-GeneID:
109093401
NCBI-ProteinID:
XP_042584118
Ensembl:
ENSCCRG00000002480
UniProt:
A0A9Q9WIN6
LinkDB
All DBs
Position
B7:complement(28271386..28281087)
Genome browser
AA seq
569 aa
AA seq
DB search
MLSISCVFSFPRALRNCDRTPDRNSIMACSDMEKLSLDVDPYCDSDLSGCAAAMEKERES
YLSPTENTSTISVSASIPPDQQGYDVEFDPPLESKYECPICLMGLRSAVQTPCGHRFCNS
CIKKSIRDTGQKCPVDNEVLLEEQLFPDNFAKREILSLTVRCPNVGCSDKMELRQLEKHL
SQCKFATVQCPQCLESVRKSHLDEHKSEQCFQRLMTCPACAGSFVYANKQIHEQICPFAN
TVCEYCEMELIRDQLALHCDTDCLKAPVACTFSTFGCHVKMPRNELAQHMQEFTQMHMRC
MAEFLRSQTLSSCPVPSVAAHSASDERGASARAQDSCQCRQELMNLRETVLELEGRLVRQ
DQQIRELCIHNETQKNQVTELRRKLSSLEDATRELEAQQYQGVYVWRLENFSLHLRNQEA
GQPIVLHSPPFYTGRPGYKLCLRLHLQTPSAPRCSNYISLFVHTMQGEFDSQLSWPLQGT
IRLAVLDQVEGQHHVEVMETKPDLQAFQRPTVQRNPKGFGYVTFLHLQALRQRGFVKEDV
LLVRCEVTPRFDASLRREGVQPRGSEPSL
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgttgagcatctcctgcgtcttctcgttccctcgtgccttaaggaactgtgacagaaca
ccggaccgaaacagtataatggcttgcagtgacatggagaagctcagcctcgatgtggat
ccctactgtgacagcgacctctccggttgtgcagcagccatggagaaagaaagggagtcc
tatctgagccccacagagaacacctccaccatcagtgtctctgctagcatccctccagat
cagcaaggctatgacgtggagtttgaccctccgctagagagcaagtacgagtgccctatc
tgtctgatgggtctccgctctgcagtacagacaccgtgtggacatcgattctgcaactca
tgcatcaagaagtccatcagggacacagggcagaaatgtccagttgacaatgaggtgctg
cttgaggaacagctcttccctgataacttcgccaaacgagagattctctcacttactgtc
cgatgtcctaatgtaggatgcagtgataaaatggaattgcgccaactagagaaacacttg
tctcagtgtaagtttgccacagtgcagtgccctcagtgtctggaatctgttcgtaagagt
cacctggatgaacacaagagcgagcagtgttttcagcggcttatgacttgccctgcctgt
gcagggagctttgtgtatgctaacaaacagattcatgaacagatttgtcctttcgccaat
acagtgtgtgaatattgtgaaatggagcttattcgggatcagttggcattgcactgtgac
acagactgtctgaaagctcctgtggcctgtactttcagcacttttggttgtcatgtaaag
atgccaagaaatgagctggcccagcacatgcaggaatttacacagatgcacatgcgttgc
atggctgagtttctgcgtagccagactctaagtagctgcccagtgccctcagttgccgcc
cactctgcgtcagatgaacgtggggcctcagcccgagcccaagattcttgccagtgtaga
caagagctgatgaacctgcgtgagacggtcttggagctggagggccggctggttcgtcaa
gatcaacagatccgcgagctgtgcatccacaatgagacacagaaaaaccaagtcacagag
ctacgccgaaagctgagctcactggaggacgccacccgagagctggaagcccagcagtat
caaggcgtctacgtatggcgcttggagaacttctcacttcacctgcgcaaccaagaagcc
ggtcaacccatagtcctccacagcccccctttctacacgggacggccggggtacaaactc
tgcctacggctgcatctgcaaactcccagcgccccacgctgttccaactacatctcactt
ttcgtgcacactatgcagggtgagtttgacagccagctctcctggcccttgcagggcaca
atccgactggcagtgttggaccaggtcgaggggcagcatcacgtggaagtgatggagacc
aagccagacctgcaggccttccagaggcccactgtgcaacgcaaccccaagggtttcggc
tatgtcactttcctgcacctacaggctttgcggcagcgtgggtttgtgaaagaagacgtg
ctactggtgcgctgcgaggtcacaccacgattcgacgctagcctcaggagggaaggggtc
caacctcgggggtcagaaccttcactttga
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integrated database retrieval system
