Kaistella carnis: EIB73_02760
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Entry
EIB73_02760 CDS
T06869
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccas
Kaistella carnis
Pathway
ccas03030
DNA replication
ccas03410
Base excision repair
ccas03420
Nucleotide excision repair
ccas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EIB73_02760 (ligA)
03410 Base excision repair
EIB73_02760 (ligA)
03420 Nucleotide excision repair
EIB73_02760 (ligA)
03430 Mismatch repair
EIB73_02760 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccas03032
]
EIB73_02760 (ligA)
03400 DNA repair and recombination proteins [BR:
ccas03400
]
EIB73_02760 (ligA)
Enzymes [BR:
ccas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EIB73_02760 (ligA)
DNA replication proteins [BR:
ccas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EIB73_02760 (ligA)
DNA repair and recombination proteins [BR:
ccas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EIB73_02760 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EIB73_02760 (ligA)
MMR (mismatch excision repair)
DNA ligase
EIB73_02760 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EIB73_02760 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
HHH_3
BRCT_2
zf-ribbon_3
Motif
Other DBs
NCBI-ProteinID:
AZI34421
UniProt:
A0A3G8Y0A7
LinkDB
All DBs
Position
612441..614444
Genome browser
AA seq
667 aa
AA seq
DB search
MPENIQQKIEELRTELHQHNYNYYILDEAKISDFEFDLKLKELQELEKNHPEFYDANSPT
LRVGGEITKNFPTIQHQFRMYSLDNSYDFDDLEDWEKRIIKTINEPVEFVAELKYDGASI
SIFYESGKLRQAVTRGDGFQGDEITANVKTISDIPLTLKGDFPTQFFMRGEIYLTRKNFD
KINARREEEGLDLFMNPRNTASGSLKMQDSAEVRKRGLSAVLYQFISSEIPAETHWELLQ
NSRKWGFKVSDQAKLCKNLDEIKAFITYWDEHRHELPFEIDGIVLKVNSIKQQAQLGYTA
KSPRWAMAYKFKAEKVETELLTVTYQVGRTGAITPVANLKPVLLAGTIVKRASLHNEDII
KKLGLHEHDFVYVEKGGEIIPKIVGINEEKRKSDSKEIEYITNCPECGTELVRIEDQAIH
FCPNDLHCPPQVVGRMIHYVSRKALDIEGLGAETIEQLYREKLIENPADFYTLTKEQILP
LERMAEKSAQNIIDGVEKSKQIPFEKVLFGIGIKHVGETVAKKLAKNFNSIDDLKNATAE
ELIQVEDIGGKIAESIVNFFKDPENLLMIERLKSYGVQLEKGENTNEVISTVLEDKTFLF
TGKLSLFTREAAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQDIGTSEILDEQQ
FLDLISN
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaaacatccagcaaaaaatagaagaacttcgtacagaacttcatcagcataat
tataattactacattttagacgaagccaagatttctgattttgaatttgatttgaaatta
aaggaattgcaggaactcgaaaaaaatcatcctgaattttatgatgctaactctcccact
ttgcgcgttggaggcgaaatcactaaaaactttccgaccattcaacatcaattcagaatg
tattctctggataattcttacgatttcgatgatttggaagactgggaaaaaagaattatc
aaaaccattaatgaacctgtcgaatttgtcgccgaactaaaatacgatggcgcttccatt
tctattttttacgaaagcggaaaactgagacaagccgtaactcgtggtgatggttttcaa
ggcgacgaaatcacagcgaatgtaaaaacgatttcagatattcctttaaccttaaaaggt
gatttcccgactcagttttttatgcgcggtgaaatttatttaacccgaaaaaactttgac
aaaataaatgcaagacgtgaagaagaaggattggacttgttcatgaatccaagaaatacg
gcttcaggaagtttgaaaatgcaggattcagcggaagttcgaaaacgtggactttcagcc
gtactatatcaatttatttcttctgaaattccggcagaaacacattgggaattgttgcag
aattccagaaaatggggtttcaaagtttcggatcaggcaaaattatgtaaaaatttagac
gagataaaagcctttattacttactgggacgagcatcgacatgaacttccttttgaaatc
gatggaattgttttaaaagtaaattctattaagcaacaagcgcaattaggttatacggcg
aagtctccgcgttgggcaatggcgtataaattcaaagccgaaaaggtagaaaccgaatta
ttaaccgtcacttatcaggttggtagaacgggagcgattacgcctgttgctaatttaaaa
cctgttttacttgccggaacaatcgttaaaagagcaagtttacacaatgaagacatcatt
aaaaaactcggtttgcacgaacatgattttgtatatgtagaaaaaggtggtgagattatt
ccaaagattgttggcattaatgaagagaaaagaaaatccgattctaaggaaattgaatac
atcacgaactgtccggaatgcggaactgaattagtcagaattgaagatcaggcgattcat
ttttgtccgaacgatttgcattgtccgccgcaggttgtaggacgaatgattcattatgtt
tccagaaaagccctggacatcgaaggtttaggcgctgaaacgattgaacagttatatcgt
gaaaaattgattgaaaatcctgcagatttctatactttaacaaaagagcaaatccttcca
ttagaaagaatggcagaaaaatctgcacagaatattatcgatggtgttgaaaaatcaaaa
caaattcccttcgaaaaagtattgtttggaattggcataaagcacgttggagaaacggtt
gctaaaaaattagcgaaaaatttcaactcgattgatgatttgaaaaatgctactgccgaa
gaattaattcaggttgaagacatcggtggaaaaatcgctgaaagtattgtcaatttcttt
aaagatccagaaaacttattgatgattgaacgtttgaaatcttacggagttcaactggaa
aaaggagaaaatacgaatgaagttataagcactgttttagaagataagacttttctcttt
accggaaaactttctctttttacaagggaagccgccgaagaaatggtcgaaaaacatggt
ggaaaaaatatttctgcagtttctaaaaacctcaattatttagtggttggtgaaaaggcc
ggaagcaaactaaagaaagcccaagacattggaacgagtgaaattcttgatgagcagcaa
tttttggatcttatttctaattaa
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integrated database retrieval system
