KEGG   Cynara cardunculus var. scolymus (artichoke): 112505758
Entry
112505758         CDS       T05604                                 
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112505758
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccav03041]
    112505758
Spliceosome [BR:ccav03041]
 Complex A
  U2 snRNP components
   U2 related factors
    112505758
 Complex B
    112505758
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    112505758
SSDB
Motif
Pfam: SMN_Tudor TUDOR TbpB_B_D PolyA_pol CHASE3
Other DBs
NCBI-GeneID: 112505758
NCBI-ProteinID: XP_024965489
LinkDB
Position
LG 2
AA seq 306 aa
MEGGGEEVSIEELSSNLSTYKQQLQEVRKLLKDDPGNAEYTDVEKELVEVIALTEELLAT
AQDEAGNSGVGIGTSADVSPSFHHSGGTLQNVSVSSEMFDGHKLPVGAKVQAVYSEDGEW
YDATIEAFTQNGYLVAYSGWGNKEEVDPANVRPLEEGIVDPLLEAEKEAEATKQALKRKI
AQAASADVDFQSKSLPAKLRIEPEDPEDVKAAKRKKIHAFKSKMRKEQIEVTQNKRQNAW
QQFQTTKGRAKKIGFFSGRKRESIFKSPEDPFGKVGVTGSGKGLTDFQKREKHLHLKGAN
AENTED
NT seq 921 nt   +upstreamnt  +downstreamnt
atggagggagggggcgaggaagtcagcatagaggagctctcttcgaatctctctacttac
aaacaacagcttcaagaggtcaggaagcttttgaaggatgaccctgggaatgccgagtat
actgatgtggagaaagagcttgtggaggtgattgctttgactgaagaactcctggcaact
gcacaggatgaagctggaaattctggagtgggtattggaacaagtgctgatgtatcccct
agttttcaccattctggaggtaccttacaaaatgtttcggtatcaagtgaaatgtttgat
gggcacaagcttcctgttggtgctaaagttcaagctgtttatagtgaagatggcgagtgg
tatgatgcaacaatagaggccttcacgcaaaatggatatttggttgcatatagtggctgg
ggaaataaggaagaggttgatcctgctaatgttaggcctttagaagaaggaattgttgat
ccattgctggaagctgagaaggaggcagaagctactaagcaagctcttaaacgtaagatt
gcccaagctgcttcagctgatgtggacttccagtcaaaaagcttgccggcaaagcttcgt
attgaaccagaagatcctgaggatgtgaaagctgctaaacgtaagaagatacatgctttc
aagtctaagatgcgaaaagagcaaattgaggttacacagaataaaagacaaaatgcatgg
caacaatttcagaccacgaaaggccgtgccaagaagattgggttcttctcgggtcgcaag
cgggaaagcatattcaagtctccagaggacccttttgggaaggtgggtgtaaccggaagc
gggaaaggtctgacagatttccaaaaaagggaaaaacatctacatctcaagggagctaat
gctgaaaacaccgaggattag

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