Cynara cardunculus var. scolymus (artichoke): 112506888
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Entry
112506888 CDS
T05604
Name
(RefSeq) ABC transporter I family member 19
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112506888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112506888
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112506888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
ORC-CDC6-like
SMC_N
AAA_15
AAA_28
Zeta_toxin
NACHT
AAA
AAA_22
AAA_23
AAA_30
AAA_18
SRP54
AAA_24
PduV-EutP
Arf
AAA_7
T2SSE
AAA_33
AAA_14
FtsK_SpoIIIE
AAA_5
AAA_25
AAA_16
G-alpha
Motif
Other DBs
NCBI-GeneID:
112506888
NCBI-ProteinID:
XP_024966974
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All DBs
Position
LG 2:2116716..2121256
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AA seq
286 aa
AA seq
DB search
MEVESSSIKVNGMQFGYSGENPIFVDFNLKISPRSRCLLVGANGSGKTTLLKILAGKHMV
GGRNVVRVLDFSSFHDTHLVCSGDLSYLGGSWTKTIGSAGEVPLQGDFSAEHMIFGVEGI
DPVRREKLIDLLDIDLQWRMHKVSDGQRRRVQICLGLLHPFQVLLLDEVTVDLDVVARMD
LLEFFKEECEQRGATIVYATHIFDGLESWATDLAYIQDGELKRYEKLADLPEMKNSSNLL
SVVESWLRAETKNPKKKPVNPSPLIPKTSPFDSSPFRSSRHMAYYR
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcgaatcaagcagtatcaaagtaaatggtatgcaattcgggtatagtggcgag
aatcctatcttcgtggatttcaacctcaagatttctcctcgatctcgttgtcttcttgtt
ggcgccaatggatctgggaaaactactttgctgaagatcttggcaggaaagcatatggtt
ggtgggagaaatgttgtgcgggtgttagatttttcatcttttcacgacacacacttagtt
tgtagtggtgatttgtcctacttgggtggatcatggactaaaactattggttctgctgga
gaagtgccactacaaggagacttctctgcggaacatatgatatttggagttgaagggatt
gaccctgtaagaagagagaagttgattgacctgttggacattgatctacagtggcggatg
cacaaagtgtctgatgggcaacggcgtagagtacaaatttgcttgggcctccttcatcct
tttcaggttcttttgctagatgaagtaactgtcgacctggatgttgttgcaaggatggat
ttgctggagttcttcaaggaggaatgtgagcagagaggagctacaatcgtgtatgcaacc
catatatttgacggcctagagtcatgggcaacggatcttgcttacatacaagatggagag
ttgaagaggtatgagaaattggcagatcttcccgaaatgaaaaactcctccaatctgcta
tcggtggttgagtcgtggctcagggctgaaacaaaaaacccaaaaaagaaacccgtcaat
ccttcacccctaattccaaaaacctctccgttcgattcttcccctttcagatcatccagg
cacatggcatactaccgatga
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