Cynara cardunculus var. scolymus (artichoke): 112517305
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Entry
112517305 CDS
T05604
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112517305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112517305
Spliceosome [BR:
ccav03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112517305
Complex C
U5 SnRNP specific factors
112517305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
EF-G_D2
SRPRB
Ras
Septin
SOI
Motif
Other DBs
NCBI-GeneID:
112517305
NCBI-ProteinID:
XP_024980463
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Position
LG_8
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AA seq
988 aa
AA seq
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MDDSLYDEFGNYIGPEIESDQDSDREDEDEDLPEKPEDDRAESDEENVGAGPNGWITTTD
DVDMENQIVLAEDKKYYPTAEEVYGEEVETLVMDEDEQPLELPIIKPVRDIKFEVGVKDS
STYVSTQFLLGLSSNPTLVRNVALVGHLQHGKTVFMDMLVEQTHHISTFDQNSEKHMRYT
DTRIDEQERRISIKAVPMSLVLEDSNSKSYMCNIMDTPGHVNFSDEMTAALRLADGAVLI
VDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPKDAYHKLRHTIEVLNNH
ITAVSSTAGNVQIIDPAAGNICFASGSAGWCFTLQSFAKLYVKLHGIPFDANKFATRLWG
DNYYDPATRAFKKKQPSSGVERSFVQFILEPLYKIYSQVIGEHKKSVETTLAELGVTLSN
AAYKLNVRPLLRLACSSVFGSATGFTDMLVHHIPSAKEAAARKVDHIYTGPKDSGIYNVM
EDCDPSGPLMVNITKLYPKSDCSVFDAFGRVYSGEIHTGQTVRVLGEGYSPDDEEDMTVK
EVTKLWVYQSRYRIPVNKAPPGSWVLIEGVDASIMKTATLCNSEYDEDVYIFRPLQFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVV
SVDWPRKKLGDFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLSSEVDKSLLNAVKDS
IVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGTGQIIPTARRVAYSAFLMATP
RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHITADVPQPGTPAYIVKAFLPVIESFGFET
DLRYHTQGQAFALSAFDHWAIVPGDPLDKSIVLRPLEPAPIQYLAREFMVKTRRRKGMSE
DVSINKFFDEAMVVELAQQAADLHQQMI
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagcttgtatgatgagtttggaaactacattggacctgaaatcgagtctgat
caggatagtgatagagaggatgaagatgaagatctcccagaaaagcccgaggatgatagg
gctgagtctgatgaagagaatgtgggtgctggacccaatgggtggataactactactgat
gacgttgatatggaaaatcagattgttcttgcagaggataaaaagtattaccctactgca
gaagaggtgtatggtgaagaggtggaaacactagtaatggatgaggatgaacagcccctt
gagctacccataattaaaccggttagggatattaagtttgaagtgggtgttaaagattcg
tccacctatgtgtcgacccaatttcttttgggtctctcatcgaatcctaccttggttagg
aatgttgctttggttggacacttgcagcatgggaagacagtcttcatggatatgttggtt
gagcaaactcaccatatttctacttttgatcaaaacagcgagaagcatatgagatacact
gatacaaggatagatgagcaagagagaaggatatcaatcaaggcagttcctatgtcactt
gttctcgaggacagcaattcgaaatcctatatgtgtaatatcatggatacacctggtcat
gtcaatttttctgatgaaatgactgctgccctcaggcttgctgatggggcagtgttgata
gttgatgctgctgaaggagtcatggtaaacacagagagggcgatccggcatgcgatccaa
gagcgcctacctatagtagttgtcataaacaaggttgacagattaataactgagctaaaa
ctaccaccaaaagatgcctatcataagttgaggcataccattgaagtcctcaataaccac
atcactgcagtctcttcaactgctggcaacgttcaaattattgacccagctgctggaaac
atatgttttgctagtggtagtgcaggatggtgcttcactctgcaatcgtttgccaaatta
tatgttaagcttcatgggatcccgtttgacgctaacaaatttgcgactcgactttgggga
gataattattacgatccagccactagagcttttaagaagaagcaaccttcaagtggggtg
gaaagatcgtttgtgcagttcatccttgaacctctctacaagatatacagccaagtaatt
ggagaacataaaaaaagtgtggaaacaactctagcagaacttggtgtgactttgagtaat
gctgcttacaaattgaatgttaggcctttgcttaggttagcttgtagctctgtttttggg
tcagccaccggctttactgacatgctggtccaccacatcccttctgctaaagaggctgca
gcgcggaaggttgatcatatttatactgggcctaaagattccggaatttacaatgtcatg
gaagattgtgatccttcggggccgcttatggtcaatattactaagttgtatcctaaatca
gattgcagtgtttttgatgcatttggaagggtttatagtggtgaaattcacacagggcag
actgttcgtgtgctcggagaaggttactcgccagatgatgaggaagatatgactgtaaaa
gaagtaacgaaactgtgggtttatcaatctcgttacaggataccggttaataaggctcct
cctggttcttgggttcttattgaaggtgttgatgcttcaattatgaaaactgccaccctt
tgtaattcagaatacgatgaggatgtatacatattcaggcctcttcaattcaacactctt
ccagtggtgaaaacagcaaccgagcccttgaatccaagcgagttgccgaaaatggtcgag
ggtcttaggaagatcagcaagagctatcctttagctattactaaagttgaggagtccgga
gaacacactattttaggtactggagagttgtatctagattctataatgaaggaccttagg
gagctatattcagaagtcgaagtcaaggtggcagatccagttgtctcgttctgcgaaaca
gtggtggagtcttcatcgatgaaatgctttgctgaaacgcctaacaagaaaaataaaatt
actatgattgctgaaccattggagagaggtcttgcggaggatattgagaatggtgttgta
agtgtggattggcctagaaagaaactaggagacttttttcaaaccaaatatgattgggat
ttgcttgctgcaagatctatatgggcctttggaccggacaagcagggacctaatatatta
ttggatgacacactctcaagtgaagtcgacaaaagcttgttgaatgctgtgaaggattct
attgttcaaggattccagtggggtgcacgtgagggtcctctatgtgatgagcccatccgt
aatgttaagttcaaaatagtagatgcaagaattgcaccagagccattacatcgtggaacg
ggtcaaatcattccaacagcccgacgggttgcctattcagcttttcttatggcgacacca
cgacttatggagcctgtatattacgtggagatacaaacacctatagattgtgtttctgct
atatacacggtgttatctcgaagacgtggacatataactgctgatgttcctcaaccagga
actccagcctatatagtcaaggcattcctacctgtgattgaatcattcggttttgagaca
gacttacggtaccatacccagggccaggcatttgccctctcggcttttgatcactgggcc
attgttcctggtgatccattggacaaaagcattgtcttacggccactggagcctgcacca
attcaataccttgcacgtgaatttatggttaaaacaagacgtaggaagggaatgagcgag
gatgtgagcatcaataagttcttcgacgaggctatggtggtggagcttgcccaacaggcg
gccgacctccaccagcagatgatctag
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