Cynara cardunculus var. scolymus (artichoke): 112527470
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Entry
112527470 CDS
T05604
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112527470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112527470
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112527470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_15
AAA_29
AAA
AAA_23
Arf
ORC-CDC6-like
Zeta_toxin
AAA_24
nSTAND3
AAA_30
ATP-synt_ab
Zn_ribbon_HMPTM
Motif
Other DBs
NCBI-GeneID:
112527470
NCBI-ProteinID:
XP_024993916
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Position
LG 15:complement(3866455..3872931)
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AA seq
328 aa
AA seq
DB search
MWVNDRNDNNPIVVINKLKFTYPGIDGHPPPGSVPLIEDFSLTLNSGDRCLLVGSNGAGK
TTILKILGGKHMVDPDMVRVLGRSAFHDTSLISSGDLAYLGGEWRREVAFAGFDVAIQMD
ISAEKMLFGVSGIDPERRAQLIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKEFKVLLLD
EITVDLDVLARADLLTFLRKECEEHGATIIYATHIFDGLENWPSHIVYVAHGKLQLASTM
EEVKNMSNLSLMRTVEQWLRKERDEERKRRKERKANGLPEFDRRIDGSRVIGGDPVRVVN
NGWAAGRLNSTVAGEKNFMYSSNRVMRQ
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgtgggtgaatgatcggaatgacaataacccaattgtggttattaacaaactcaagttc
acgtacccagggatcgacggccacccgcctcctggttcagttcctctcattgaagatttc
tctctcactctcaattccggtgatcgttgccttcttgtcggatctaatggcgcagggaaa
acgacaatactgaagatactgggagggaagcacatggtggatcccgacatggttcgggtt
cttgggagatccgctttccatgacacctctttgatttcttccggtgacctcgcttatctt
ggtggagagtggagaagggaagttgcttttgctggctttgatgttgcgatacaaatggat
atatctgctgagaaaatgttatttggcgtgtcaggtatcgatccagagagaagagctcag
ctaattaaggttttagatattgatctgtcatggaggatgcacaaggtatctgacggtcag
cgaagaagagtgcaaatatgcatgggcctcctaaaggaattcaaggttcttcttcttgat
gaaattactgttgacctagatgtgcttgccagggctgatcttttgacattcctaaggaag
gaatgtgaagagcatggtgccacaatcatatatgccacacatatatttgatggtctcgag
aattggccttcgcatattgtgtatgttgctcacgggaagttgcaattagcatctactatg
gaagaggtcaaaaacatgagcaatctgtctctaatgagaacagtagagcaatggctgagg
aaagaacgagacgaggagaggaagagaaggaaagagagaaaagcaaatggacttccagaa
ttcgataggcgtattgatgggagtcgggtaatcggcggggatccggttcgtgtggtgaac
aacggatgggctgctggaaggctgaattccaccgtcgccggtgaaaagaacttcatgtat
agttcaaacagagttatgaggcaatag
DBGET
integrated database retrieval system
