Corynebacterium canis: CCANI_05835
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Entry
CCANI_05835 CDS
T09233
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccaw
Corynebacterium canis
Pathway
ccaw03030
DNA replication
ccaw03410
Base excision repair
ccaw03420
Nucleotide excision repair
ccaw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CCANI_05835 (ligA)
03410 Base excision repair
CCANI_05835 (ligA)
03420 Nucleotide excision repair
CCANI_05835 (ligA)
03430 Mismatch repair
CCANI_05835 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccaw03032
]
CCANI_05835 (ligA)
03400 DNA repair and recombination proteins [BR:
ccaw03400
]
CCANI_05835 (ligA)
Enzymes [BR:
ccaw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CCANI_05835 (ligA)
DNA replication proteins [BR:
ccaw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CCANI_05835 (ligA)
DNA repair and recombination proteins [BR:
ccaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CCANI_05835 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CCANI_05835 (ligA)
MMR (mismatch excision repair)
DNA ligase
CCANI_05835 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CCANI_05835 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WJY75013
LinkDB
All DBs
Position
1295415..1297451
Genome browser
AA seq
678 aa
AA seq
DB search
MTAISTELRRQWDDLAQQVRHHRDLYYNGQPIIPDADFDVLFQQLKDLEAEHPELAVPDS
PTMEVGAPPSVASSFANVEHLERMLSLDNVFDGIELAEWLERTPAAEYITELKIDGLSLD
LVYRNGSLERAATRGDGRVGEDVTENARVIHGLPHELIPNDAFPIPELLEVRGEVYIAVA
DFSEVNARRIEEGGKPFANPRNAAAGSLRQKNVEAVRRRKLRMICHGIGAAEGFRPASLS
EAYQALKAWGLPVSEDVRVVTTPKEVQQRVKYWEKHRHDPPHEMDGLVIKVNSIAEQRAL
GATSRAPRWAIAYKYPPEEVTTKLLDIRVQVGRTGRVTPQAVMEPVFVAGSTVSMATLHN
PTEVKRKGVLIGDTVVIRKAGEIIPEVLGPVVELRDGTEREFVFPEVCPECGTKLAPAKE
GDVDWRCSNSRFCPSQIKRRLTHLAGRGAFDIEALGEKGAADLVDCGVLTDEADLFDLDE
TALLKSSVYTTKAGKVNANGKKLLKNLEESKSVDLWRVLVGLSIRHVGSTASRALTARYG
SIDALLSASVEEIAETDGVGAIIAQSFKDWFEVDWHRNIVDQWAAAGVRTVDEAKEEIPQ
TLAGKTVVVTGSLEGFTRDSAKAAILERGGKASGSVSKKTDVVVAGANAGSKETKARELG
LPILDEAAFVQLLETGEF
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgactgccatttcaaccgagttgcggcgccagtgggatgaccttgcccagcaggtgcgc
catcaccgcgatttgtactacaacggccagccgatcatccccgatgctgactttgacgtg
ttgtttcagcagctcaaggatttggaggccgagcacccagaattggcggtcccggatagc
ccgacgatggaggtgggcgcgccgccgagcgtggcgtcgagctttgccaatgttgagcac
ctggaacgcatgctgagtttagataatgtgttcgacggcatcgagctcgcggaatggttg
gagcgtaccccggccgccgaatatattaccgagctgaaaatcgatggcctgtcgctggac
ctcgtgtaccgcaacggttccctcgaacgcgccgctacgcgtggcgacggccgcgtgggc
gaagacgtcaccgaaaacgcccgcgtgatccacggcttgccgcacgaactgattcccaat
gatgcatttcccatccccgagctgctggaggtgcgcggcgaggtatatatcgccgtggcg
gatttcagcgaggtgaacgcccgccgcatcgaggaaggcggcaaaccctttgccaatccg
cgtaacgccgccgccggttcgttgcgccaaaagaacgtggaggcggtgcgcaggcgaaag
ttgcgcatgatctgccatgggatcggcgccgccgagggcttccgcccggcgagcctgtcc
gaggcgtatcaggcgctgaaagcgtggggcttgcccgtttccgaggatgttcgtgtggta
accacaccaaaggaggtgcagcagcgcgtcaagtattgggagaagcaccgccacgatccg
ccgcacgaaatggatggattggtcatcaaggtgaattccatcgcggagcagcgtgcattg
ggcgctacctcgcgcgcgccgcggtgggcgatcgcgtacaagtacccgccggaggaggtg
accaccaagctgctggatatccgcgttcaggtgggccgcaccggccgcgttacaccccag
gccgttatggaacctgtgttcgttgcgggttccaccgtttccatggccacgctgcacaat
cccaccgaagtaaaacgcaagggtgttctgatcggcgacactgtggtgatccgcaaggct
ggcgagattattcccgaggtcctcggccccgtggtggaactccgcgacggtaccgaacgt
gaattcgtttttccggaggtatgcccggaatgcggcaccaagctcgcaccggcaaaagag
ggggatgtggactggcggtgcagcaattcccgcttctgtcccagccaaattaagcgccgc
ctcacgcacctagcgggccgcggcgccttcgatatcgaggcgctcggcgagaagggtgcg
gcggatttggtggattgcggcgtccttaccgacgaggcggatttgttcgatctcgacgag
accgcgctgctgaagtccagcgtgtacaccacaaaggccggcaaggtaaacgccaatgga
aaaaagctgctcaaaaacctcgaggaatcgaagagcgtggacctgtggcgcgtcctcgtg
ggcctgtccatccgccacgtcggctccacggcgtcccgtgcgcttaccgcccgttacggg
tctatcgacgccctgctctcggcgtccgtagaagaaatcgccgaaaccgatggcgtcggc
gccatcatcgcgcaatcattcaaagattggttcgaggtcgattggcaccgcaatatcgtc
gaccaatgggctgcggccggggtgcgcacggtcgacgaggccaaggaggagatcccccaa
accttggccgggaagaccgtcgtggttactggttcgctggaaggtttcacccgcgattcc
gcaaaggccgcgatcctggagcgtggtggcaaggcatcaggctcggtatccaaaaagacg
gatgtggtcgtggccggtgcgaacgcgggctcgaaggaaacgaaggcgcgtgagctaggg
ttgccgattctcgacgaagccgcctttgtgcagctcttggagaccggcgaattctag
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integrated database retrieval system
