Cupriavidus cauae: KZ686_12370
Help
Entry
KZ686_12370 CDS
T08639
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccax
Cupriavidus cauae
Pathway
ccax03030
DNA replication
ccax03410
Base excision repair
ccax03420
Nucleotide excision repair
ccax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KZ686_12370 (ligA)
03410 Base excision repair
KZ686_12370 (ligA)
03420 Nucleotide excision repair
KZ686_12370 (ligA)
03430 Mismatch repair
KZ686_12370 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccax03032
]
KZ686_12370 (ligA)
03400 DNA repair and recombination proteins [BR:
ccax03400
]
KZ686_12370 (ligA)
Enzymes [BR:
ccax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KZ686_12370 (ligA)
DNA replication proteins [BR:
ccax03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KZ686_12370 (ligA)
DNA repair and recombination proteins [BR:
ccax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KZ686_12370 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KZ686_12370 (ligA)
MMR (mismatch excision repair)
DNA ligase
KZ686_12370 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KZ686_12370 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UZN48556
LinkDB
All DBs
Position
1:complement(2767364..2769547)
Genome browser
AA seq
727 aa
AA seq
DB search
MPAKKHGAPTSADAPRPAAADAADAANAANAARPDNSADKPDAPAARADWLREQIEHHNY
QYYVLDAPTIPDAEYDALFRELQELEAAHPELLTPESPTQRVGGQPLTAFATVRHRLPML
SLNNAFDDDDVIGFDRRCAQGLGRTVAAEGAADLFSAADAVEYACELKFDGLAMSLRYEN
GRLVQAATRGDGETGEDVTANVRTIKAIPLKLKAGAPAVIEVRGEVFMYRRDFDRLNARQ
AEAGEKTFVNPRNAAAGSLRQLDPRITARRPLSFFAYGLGELDGEPRPATHDALLERFAA
LGLPVCAERAVVKGAQGLLDFYRGVGRKRDSLPYDIDGVVYKVNAVEEQERLGFVSRAPR
FALAHKFPAQEMTTVVEDIEVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRRKD
VHIGDTVIVRRAGDVIPEVVAVVPERRPADARPFTMPTACPVCGSHIERLEDEAIARCTG
GLICAAQRKQALLHFAQRRAMDIEGLGEKVVDQLVEQGIVRTPADLYKLGVAKLAALDRM
ADKSAGNLVAAIDASRATTLNRFIFALGIRHVGEATAKDLARHFGKLDGLMAADEAALLE
VNDVGPVVAQSIAHFFAEAHNVEVIEQLRAAGVHWPESEPAARAPAPLAGKTFVLTGTLP
TLSREAAKEMLEAAGAKVAGSVSKKTDYVVAGEEAGSKLAKAQELGVPVLDEAGMMALLE
EHGAAGR
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgccagcaaagaaacacggcgctcccacttcggctgatgcgccgcggcctgccgcggcc
gatgcagccgacgccgccaatgccgccaatgccgcccggccggacaattccgccgacaag
cccgacgccccggccgcgcgtgccgactggctgcgcgagcagatcgagcaccacaactac
cagtattacgtgctcgacgcgccgaccattccggacgccgagtacgacgcgctgttccgc
gaactgcaggaactcgaggccgcgcatcccgagctgttgacgccggaatcgccgacccag
cgcgtcggcggccagccactgacggcgttcgcgacggtgcggcaccggctgccgatgctg
tcgctgaacaacgccttcgacgacgacgacgtgatcggcttcgatcgccgctgcgcgcag
ggcctgggccgcaccgtggccgccgagggcgccgccgacctgttctcggccgccgatgcg
gtcgaatatgcctgcgagctcaagttcgacgggctggcgatgtcgctgcgctacgagaac
ggccggctggtgcaggccgccacgcgcggcgatggcgagaccggcgaggacgtgaccgcc
aatgtgcgcacgatcaaggcgattccgctgaagctgaaggccggcgcgcccgcggtgatc
gaggtgcgcggcgaggtcttcatgtaccggcgcgatttcgaccggctcaatgcacgccag
gccgaggccggcgagaagaccttcgtcaatccgcgcaacgccgcggccggcagcctgcgc
cagctcgatccgcgcatcaccgcgcgccgtccgctgtcgttctttgcctacgggcttggc
gagctggacggcgagccgcgcccggccacccacgatgcgctgctggaacgcttcgcggcg
ctcggcctgccggtctgcgccgagcgcgccgtggtcaagggcgcgcaggggctgctcgac
ttctatcgcggcgtcggcaggaagcgcgacagcctgccctatgacatcgacggcgtggtc
tacaaggtcaatgcggtcgaggagcaggaacgcctgggcttcgtctcgcgcgcgccgcgc
ttcgcgctggcgcacaagttccccgcgcaggaaatgaccaccgtggtcgaggacatcgag
gtccaggtcggccgcaccggcgcgatcaccccggtggcgcggctggcgccggtgttcgtc
ggcggcgtcacggtgaccaatgccacgctgcacaacgaggacgagatccgccgcaaggac
gtgcatatcggcgacaccgtgatcgtgcgccgcgccggcgacgtgattccggaagtcgtc
gccgtggtgccggagcgccggcccgccgatgcgcggcccttcacgatgccgaccgcttgc
cccgtgtgcggctcgcatatcgagcggctggaggacgaggcgatcgcgcgctgcaccggc
gggctgatctgcgccgcgcagcgcaagcaggcgctgctgcatttcgcccagcgccgcgcg
atggatatcgaagggctcggcgagaaggtggtcgaccagctggtggagcagggcatcgtg
cgcacgccggccgacctgtacaagctcggcgtggccaagctcgcggcgctggaccgcatg
gccgacaagtcggccggcaatctggtggccgcgatcgacgcgtcgcgcgccaccacgctg
aaccgcttcatcttcgcgctgggcatccgccatgtcggcgaggcgaccgccaaggatctg
gcgcggcatttcggcaagctcgacggactgatggcggccgacgaggccgcgctgcttgag
gtcaacgacgtcggcccggtggtcgcgcagtcgatcgcgcatttctttgccgaggcgcac
aacgtcgaggtcatcgagcagctgcgcgccgccggcgtgcactggcccgagagcgagccc
gccgcgcgcgcgccggcgccgctggcgggcaagaccttcgtgctgacgggcaccttgccg
acgctgtcgcgcgaggcggccaaggagatgctggaggcggccggcgccaaggtggcgggc
tcggtgtcgaagaagaccgactacgtggtggccggcgaggaggcgggcagcaagctcgcc
aaggcgcaggaactgggcgtgccggtgctggacgaggccggcatgatggcgctgctcgag
gagcacggcgcggcgggacgctga
DBGET
integrated database retrieval system