KEGG   Caretta caretta (Loggerhead turtle): 125621144
Entry
125621144         CDS       T09292                                 
Name
(RefSeq) HLA class II histocompatibility antigen, DR alpha chain-like isoform X1
  KO
K06752  MHC class II antigen
Organism
ccay  Caretta caretta (Loggerhead turtle)
Pathway
ccay04145  Phagosome
ccay04514  Cell adhesion molecules
ccay04672  Intestinal immune network for IgA production
ccay05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ccay00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    125621144
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    125621144
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    125621144
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    125621144
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ccay04147]
    125621144
Exosome [BR:ccay04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   125621144
  Exosomal proteins of epithelial cells
   125621144
  Exosomal proteins of breast milk
   125621144
SSDB
Motif
Pfam: MHC_II_alpha C1-set Ig_3 ig Ig_2
Other DBs
NCBI-GeneID: 125621144
NCBI-ProteinID: XP_048673636
LinkDB
Position
13:392120..498693
AA seq 228 aa
MLSQVAFYQRTDPAQREAGEFMFEFDQDEIFHVDLERKETVWRLPDFGKFTSFEAQGALG
NIAVLKKNMEIMIQRSNRTRAQNVPPEVTVFPEDPVELGEPNVLICFVDKFSPPVLSVTW
LKNGQEVTGGVYETDFYPRQDDSFRKFSYLPFLPSQGDFYDCRVEHGGLPEPFTKHWEAQ
IPTPVPETTETLMCALGLAVGIIGIIAGTILIIKGMKMNAARNPRGPL
NT seq 687 nt   +upstreamnt  +downstreamnt
atgctctcccaggtggccttctaccagcgcacggacccggcccagcgtgaggccggggag
ttcatgttcgagttcgaccaggacgagatcttccacgtggacctggagaggaaggagacc
gtctggcgcctgcccgacttcggcaagttcaccagcttcgaggcgcagggcgccctgggc
aacatcgccgtgctgaagaagaacatggagatcatgatccagaggtcgaaccgcacgcgg
gcccagaacgtgccccctgaggtgaccgtgttccccgaagaccccgtggagctgggggag
cccaacgtcctgatctgcttcgtggacaagttctccccacccgtgctcagcgtgacgtgg
ctgaagaacgggcaggaggtgacggggggcgtctacgagaccgacttctacccccgccag
gacgactccttccgcaagttctcctacctgcccttcctccccagccagggcgacttctac
gactgccgggtggagcacggggggctgcccgagcccttcacgaagcactgggaagcccag
atacccacccccgtccccgagaccaccgagaccctgatgtgcgccctgggcctggccgtg
ggcatcattggcatcatcgcgggcaccatcctcatcatcaagggcatgaagatgaacgcc
gcccgcaacccaaggggccccttataa

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