Caretta caretta (Loggerhead turtle): 125626603
Help
Entry
125626603 CDS
T09292
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125626603 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccay03041
]
125626603 (EFTUD2)
Spliceosome [BR:
ccay03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125626603 (EFTUD2)
Complex C
U5 SnRNP specific factors
125626603 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
125626603
NCBI-ProteinID:
XP_048685724
LinkDB
All DBs
Position
24:complement(14029133..14065431)
Genome browser
AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDELGRETKDLDELDDDDDDDDIGDHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSFLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFVLEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWILIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacacagacctgtatgatgagtttgggaactacatcgggccagagctcgactccgat
gatgatgatgatgaactgggcagagagaccaaggatcttgatgagcttgatgatgatgac
gacgacgatgatataggagatcatgatgaagatcatcctggaatggaagtggtactgcat
gaggataagaaatactatccgactgcagaagaggtttacgggcctgaggtagagaccata
gtgcaggaggaagatacacagcctctcactgagcctattattaaacctgtgaaaaccaag
aaattctccctgatggaacagacgttgcctgtcaccgtgtatgagatggatttcctggca
gatctgatggacaactctgagctgattcggaatgtgaccctgtgcgggcatctccaccat
ggcaagacttgttttgtggattgcctgatagagcagacgcacccagagatcaggaagcgc
tacgaccaggatctttgctacactgacatactgttcacggagcaagagaggggtgttgga
atcaagagcaccccggtaactgttgttctaccggacaccaaggggaaatcatttctcttc
aacattatggacacgccaggccatgtgaacttttctgatgaggttactgccggtcttcga
atttccgacggagttgtgcttttcattgatgcggccgagggggttatgctgaacacagag
aggctgatcaagcacgcagtgcaggagaggctggcagtgacagtgtgcattaataagata
gatcggctgatcctggagctgaagcttccacccactgatgcctattacaaactccgacac
atagtagatgaggtcaatggcttgatcagcatgtattccaccgacgagaacctgatcctc
tcccctcttctggggaacgtctgcttctccagttcccagtatagcatttgcttcacgctt
ggctcctttgcaaagatttatgcagacacatttggagacatcaattaccaggagtttgca
aagcggctttggggtgacatctacttcaaccccaagacacgaaagttcactaaaaaggcc
ccgaccagcagttcccagcggagctttgtggagtttgtcctagaacccctgtacaagatc
ctggctcaggtggttggtgatgtggacaccactctcccccgcactctggatgagctgggc
atccacctgaccaaagaggagctgaagctaaacattcgacccctgctaaggcttgtctgc
aagaagttctttggggagttcacaggcttcgtggacatgtgtgtgcagcatattccctcc
ccaaaggtgggagccaagaccaaaatcgagcacacctacaccggcggcgtcgactcagac
ctgggggaggccatgagcgagtgtgaccctgatggtccactaatgtgtcacaccacgaaa
atgtacagcacagacgatggggttcagttccacgcctttggcagagtgctgagtgggacc
atccatgcagggcagcccgtgaaggtactgggagaaaactacacgttggaggatgaagag
gattcccagatctgcactgtgggacggctctggatctcagtggcaagataccatatagag
gtgaaccgggtccctgccggcaactggatcctaatagagggggtggaccagcccattgtg
aagactgcaaccatcacagagcctagaggcaatgaggaggctcagatcttccgtccatta
aagttcaacaccacgtctgtcatcaaaatagccgtggagccagtcaacccttcggagctc
cctaaaatgctggatggcctgcggaaagttaacaagagttacccatcgctcaccaccaag
gtggaagagtctggggagcacgtgatcctggggacgggggagctgtacctggactgtgtg
atgcatgacttacggaagatgtattcagagattgatatcaaggttgctgatccggttgtg
acgttctgtgagactgttgtggaaacttcctccctgaagtgttttgccgagacacccaat
aagaagaacaagatcacaatgattgctgagccgctggagaagggactcgcggaggacatt
gagaatgaagtggtccagatcacctggaacaggaagaagctgggcgagttcttccagacc
aagtatgactgggatttgctggctgcccgttccatctgggcctttgggccagacgctact
ggcccaaacattctagtagatgacacgctgccctcggaggtggataaggccctgctgggc
tctgtgaaggacagcatcgtgcaggggttccaatggggcacaagggaagggcccctctgt
gatgagttgatccgcaatgtgaagtttaagatcctggacgctgtgatcgctcaggagccg
ctgcaccggggaggagggcaaattatcccaacagcaaggagggttgtgtactccgccttc
ctcatggccactcctcggctgatggaaccgtactactttgtggaagtccaggcccctgct
gattgtgtgtctgcagtgtacactgtgctggcccggcggagaggtcatgtgactcaggac
gctccaatcccagggtccccgctttacaccatcaaagcctttatcccagccattgactcg
tttgggtttgagactgacttgaggactcacacgcagggacaagctttctctctctccgtc
ttccaccattggcagatagtgcctggagaccccttggacaagagtatcgtcatccggccc
ttggagccccagccagcacctcacctggccagagagttcatgatcaagaccaggcgcaga
aagggcctgagcgaggacgtgagcatcagcaagttcttcgacgaccctatgttgctggag
ctggccaagcaggatgttgttctgaactaccccatgtga
DBGET
integrated database retrieval system
