Caretta caretta (Loggerhead turtle): 125637340
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Entry
125637340 CDS
T09292
Symbol
DDX58
Name
(RefSeq) antiviral innate immune response receptor RIG-I isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04622
RIG-I-like receptor signaling pathway
ccay04623
Cytosolic DNA-sensing pathway
ccay05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
125637340 (DDX58)
04623 Cytosolic DNA-sensing pathway
125637340 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
125637340 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ccay04054
]
125637340 (DDX58)
Enzymes [BR:
ccay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125637340 (DDX58)
Pattern recognition receptors [BR:
ccay04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
125637340 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
MIP-T3
Motif
Other DBs
NCBI-GeneID:
125637340
NCBI-ProteinID:
XP_048707653
EnsemblRapid:
ENSCECG00000013739
LinkDB
All DBs
Position
5:complement(112571275..112605785)
Genome browser
AA seq
932 aa
AA seq
DB search
MTAEQKAGLRCYRQYIEKILNPAYVLGNMKEWLSDDAKERIQTEEQKEGLTAAAALFVDS
LLQLESEGWFRGFLDALNAAGYTGLREAIENWDFQKLESLEVHRQLLKRIEATMREIDAE
QIIPFLNTCLIDRECEEILQVRELKGRMAGAVKLIECLSRSDKENWPKTFHLALERAGYD
PASKLWNMKEDNDKEMDVEMMEDQNGNSSALDINIQYSEEAEVHNFSESPCSPSEVSQQP
TYGPKKPRCYQIELARPAVSGKNTIICAPTGSGKTFVALLICDNHFQNMPKEQKGKIVFL
ATKVPVYEQQKKVFTQHFERTRYKVAGISGETAGDVSSASIIEGNDIIVLTPQILVNSLK
EGTVSSLAIFTLIIFDECHNTIGNHPYNVLMTSYLNLKFDSAAKQLPQIVGLTASVGVGS
AKTLEETKEYICTLCACLDIQVLSTIRENTQELEEIVYRPKKSFRLVGKRPQNHFMDIIS
VLMSETEALASKVYPIDALSHIKSKRFGTQCYEQWIVDTQKKCRMLQLPDKKEESRICRA
LFIYTEHLRKYNDALIINEDARTQDALAYLTEFFNDIRSGGFDEIDQQLTVNFEAKQQEL
REASEDELNENPKLEELTFILNEEYRLKPETRTLLFVTTRALVSALKKWIYENPTLSYLK
PDTLMGRSKRNQQTGMTLSNQKGVLDSFKTNSDSKILITTAVADEGIDIAQCNLVLLYEY
SGNVTKMIQVRGRGRAKDSKCILVTSKSEVAENERNNIYKEEMMNKAIEQLQEWDEEKFA
RKINDLQNKEKTMRDSRKRGRTQKPLGGNRKLLCGKCKADACNTEDIRVIEESHHTVLGA
LFKERFLTKPHKKPSCYDNFEKKCKMYCRDSKCQHDWGITVRYKTFDDLPVIKIESFVVK
DVTTGKLSVFRKWRDVDFAMREFDINEMSSTE
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgactgcggagcagaaagcaggcctgcggtgctatcggcagtacattgagaagatactg
aatcctgcctatgtgctgggcaacatgaaggaatggctctctgatgatgccaaagagaga
attcagactgaagaacagaaggaggggttgactgctgctgcggcactcttcgttgactct
ctactgcagctcgaatcagaaggatggtttcggggatttctagatgcactgaatgcagca
ggttacactggtctgagagaagcaattgaaaactgggatttccaaaaacttgaaagcctg
gaagtacatcgacagctgctgaaacgtatagaagctacgatgagagaaattgatgcagaa
cagataattcctttcttaaacacttgtctcatagaccgagaatgtgaagagattctgcag
gtcagagaactgaaaggcagaatggctggtgcagtaaagctcattgaatgcctttctagg
tcagacaaggaaaactggcccaaaacctttcatctagctctagaacgagcaggatatgac
ccagcaagcaaactgtggaatatgaaagaagataatgataaagagatggatgttgagatg
atggaggaccagaatgggaacagtagtgccttggacataaatatacagtattccgaagaa
gcagaagttcacaacttcagtgaaagtccgtgttctccttcagaagtttctcaacaacct
acttatggaccaaagaagcctagatgttatcagatagagcttgcccggcctgctgtcagt
gggaaaaatacaatcatatgtgctcctactggatctgggaaaacctttgtggcacttctg
atttgtgacaatcatttccaaaacatgcccaaggaacagaaagggaagattgtctttcta
gcaactaaagttccagtatatgaacaacagaaaaaagtcttcacgcaacactttgaaaga
accaggtacaaagttgcagggatttctggggaaacggctggggatgtctcttcagcaagc
attattgaagggaatgatatcattgtcttgacacctcagatccttgtgaatagcctcaaa
gaaggaaccgtttcttcccttgccattttcactttgattatatttgatgagtgccacaac
accattgggaatcacccctataatgtgttaatgaccagctacttgaaccttaaatttgac
tccgctgcgaaacagctgcctcagattgttggcttaacagcctctgtcggcgtgggcagt
gccaagaccctcgaggagacgaaagaatacatctgtaccctctgcgcctgtctcgacata
caagtcctatctaccatcagagagaacacacaggaactggaggagattgtatacaggccc
aaaaaatctttcagactagtcgggaagcgcccccagaaccactttatggacattatctcc
gtcctgatgtctgagactgaggccctggcaagcaaggtttacccaatagatgcattgtcc
cacattaagagtaaacgtttcggaacgcaatgctatgaacagtggatcgttgacactcag
aagaagtgcagaatgttgcaactgccggataagaaagaagagagcaggatttgtagagct
ctttttatttacactgaacacttacggaaatacaatgacgccctcatcatcaacgaagat
gcacggactcaggatgcgttagcctacttgactgaatttttcaatgacattagaagtgga
gggtttgatgagatagatcaacagttaacagtgaactttgaagctaaacaacaggaactg
agagaggcctcagaagatgaactgaatgagaatcccaaactggaggagctcaccttcatc
ctgaatgaagaataccgcctgaagccagagacccgcacccttctctttgttaccacaaga
gctctagtatctgctttgaagaaatggatttatgaaaatcctacactcagctacctaaaa
ccagatacgttgatggggcgtagcaaaagaaaccagcaaacaggtatgacactctcaaat
caaaagggcgtactggactcgttcaaaaccaacagcgacagtaagatactaataactaca
gctgttgctgatgaagggattgatattgctcagtgcaacctggttctcctctatgaatac
tctggcaatgtcaccaaaatgatccaagtccgaggtcgtggaagggcaaaagatagcaag
tgcatccttgtgacaagcaaaagcgaagtggctgagaatgagagaaacaatatctataag
gaggagatgatgaacaaagccattgagcagctgcaggagtgggatgaggaaaagttcgca
aggaagataaatgacctgcaaaacaaggaaaagactatgcgagattccagaaagagaggg
agaacacaaaagcccctagggggcaatagaaaattgctctgtgggaagtgcaaagcagat
gcctgtaatacagaagacatcagggttatagaggagtctcaccacacagtcttaggtgcc
ctgtttaaggaacgttttctaacaaagcctcacaaaaaaccaagctgctatgacaacttt
gagaagaaatgtaaaatgtactgccgggactccaagtgccagcatgactggggaattaca
gtgaggtacaagacgttcgatgacctcccagtgatcaaaattgaaagctttgtggtgaag
gatgtcacaactgggaaactctcagttttccggaaatggagggatgtggattttgcgatg
agggaatttgacattaatgaaatgtccagtacagagtga
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