Caretta caretta (Loggerhead turtle): 125637892
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Entry
125637892 CDS
T09292
Symbol
TRAF6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04010
MAPK signaling pathway
ccay04120
Ubiquitin mediated proteolysis
ccay04140
Autophagy - animal
ccay04144
Endocytosis
ccay04517
IgSF CAM signaling
ccay04620
Toll-like receptor signaling pathway
ccay04621
NOD-like receptor signaling pathway
ccay04622
RIG-I-like receptor signaling pathway
ccay05132
Salmonella infection
ccay05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125637892 (TRAF6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
125637892 (TRAF6)
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
125637892 (TRAF6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125637892 (TRAF6)
04140 Autophagy - animal
125637892 (TRAF6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
125637892 (TRAF6)
04621 NOD-like receptor signaling pathway
125637892 (TRAF6)
04622 RIG-I-like receptor signaling pathway
125637892 (TRAF6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
125637892 (TRAF6)
09171 Infectious disease: bacterial
05132 Salmonella infection
125637892 (TRAF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccay04131
]
125637892 (TRAF6)
04121 Ubiquitin system [BR:
ccay04121
]
125637892 (TRAF6)
Enzymes [BR:
ccay01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125637892 (TRAF6)
Membrane trafficking [BR:
ccay04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
125637892 (TRAF6)
Ubiquitin system [BR:
ccay04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
125637892 (TRAF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF6_Z2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-TRAF_2
zf-RING_5
DUF4455
RING_XB3-XBAT31
SlyX
TRAF3_RING
Med21
CCDC18_1st
CCDC39
PspA_IM30
DUF16
DUF8221
zf-RING_11
HMMR_N
CENP-F_leu_zip
PUMA_CC
U-box
zf-C2H2
ATG16
Sina_ZnF
DUF7310
STX17_N
Ataxin_7
DUF1664
zf-C2H2_4
Spc29
DUF7607
TMF_DNA_bd
DUF948
Motif
Other DBs
NCBI-GeneID:
125637892
NCBI-ProteinID:
XP_048708901
LinkDB
All DBs
Position
6:complement(46370041..46404790)
Genome browser
AA seq
565 aa
AA seq
DB search
MMSVRLTEKDRLLGTQLVTMSLIQSDNSYRARDLETGCCAAMASACSAGAKEDSIGVSVS
SGTGNLPNSFTEETQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIR
DAGHKCPVDNEILLENQLFPDNFAKREILSLKVRCPNKGCLLKMELRHLEEHQLNCDFCS
VECPQCQGSFQKNQLQNHMTLECPRRQVCCPNCATSMAYEDKELHDQNCPLANVFCEYCN
TVLIREQMPNHYDNDCPTAPVPCTYSAFGCPEKMQRNELARHMQEFTQVHMRMMAQTLRS
ISVTTTPISYLSGLSFEPSLFSHVPPATYDCNPEVENFKETIQQLEGRLVRQDHQIRELI
AKMETQSAHVGDLKRTIQNLEEKITEMEAQQCNGIYIWKIENFSTYLRAQEEERPVVIHS
SGFYTGKPGYKLCLRLHIQLPNSQRCANFISLFVHTMQGEYDSHLPWPFQGTIRLSILDQ
SEGHVRQNHEEVMEAKPELLAFQRPAIQRNPKGFGYVTFMHLQALKQRTYVKDDTLLVRC
EVVTRLDLNSVRREGFQPRSTDGAV
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcgtccgtctaacagagaaagatcgtctcctcggtactcaactagttactatg
agcttgatacagagtgacaacagctatagagccagagatctggagactggctgctgtgca
gccatggccagtgcgtgcagtgctggagctaaagaagacagcataggtgtgtctgtcagc
agtgggactggaaaccttcccaactccttcacggaggagactcaaggatatgacgtggag
tttgatcccccgctggaaagtaaatatgaatgtccaatctgtttgatggctctacgggaa
gcagtgcagacgccatgcggacaccggttttgcaaaggctgcattgtcaaatcaataaga
gatgcaggtcacaaatgtccagtagacaatgaaattctactcgaaaaccaactcttccct
gacaactttgccaaacgggaaatcctctcactgaaggtgagatgtcccaacaagggctgt
cttctaaagatggagctgagacatctagaggagcatcagttgaattgtgacttctgctct
gtggaatgcccacaatgccagggctccttccagaagaaccagctgcaaaaccacatgaca
ctggaatgcccacggcggcaggtctgctgtccaaactgtgccacatctatggcttatgaa
gataaagagcttcatgaccagaactgtccacttgcaaatgtgttttgtgaatattgcaat
acagtgctcatcagagaacagatgcctaatcattatgataatgactgtcctaccgcccca
gtaccatgtacatacagtgcctttggatgtcctgaaaagatgcagaggaatgagttggca
cgtcatatgcaagagttcactcaggttcacatgagaatgatggctcagactctccggagt
attagtgttactacaactcccatatcctacctcagtggcctatcctttgagccgtctctc
ttctcacatgtcccacctgccacatatgactgcaacccagaagttgagaacttcaaggaa
accattcagcagttagaaggtcgactggtaagacaagatcaccaaatcagagaacttatt
gctaaaatggagactcagagtgctcacgtgggagacctcaaacgcactatccaaaatcta
gaggaaaaaattactgaaatggaggcacaacaatgtaacggcatttacatctggaagatt
gagaacttcagcacatatctgagagcccaagaagaagagagacctgttgtgatccacagc
tctggtttctacactgggaaaccaggctacaaactgtgtttgcgcctacatatccagtta
ccaaattcgcagcgctgtgctaactttatatccctctttgtccatactatgcaaggagaa
tatgacagtcatctgccttggccatttcagggcaccatacgactttctattttggatcaa
tcagagggacatgtaaggcagaatcacgaagaagtcatggaagccaaacctgagcttcta
gccttccagagaccggcaatccagcgcaacccaaaaggttttggttatgtgacattcatg
cacctgcaagctttgaagcaaagaacctatgtaaaagatgataccctcctggtgcgctgt
gaggttgtaacacgtttagacttgaacagtgtacggagagagggctttcaacctcgcagt
actgatggggctgtatag
DBGET
integrated database retrieval system
