Caretta caretta (Loggerhead turtle): 125638126 Help Entry 125638126         CDS       T09292                                  Symbol THBS1 Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism ccay  Caretta caretta (Loggerhead turtle) Pathway ccay04115   p53 signaling pathway ccay04145   Phagosome ccay04148   Efferocytosis ccay04350   TGF-beta signaling pathway ccay04510   Focal adhesion ccay04512   ECM-receptor interaction ccay04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ccay00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     125638126 (THBS1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     125638126 (THBS1)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     125638126 (THBS1)    04148 Efferocytosis     125638126 (THBS1)   09143 Cell growth and death    04115 p53 signaling pathway     125638126 (THBS1)   09144 Cellular community - eukaryotes    04510 Focal adhesion     125638126 (THBS1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     125638126 (THBS1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:ccay04131]     125638126 (THBS1)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ccay00536]     125638126 (THBS1) Membrane trafficking [BR:ccay04131]  Endocytosis   Phagocytosis    Opsonins     125638126 (THBS1) Glycosaminoglycan binding proteins [BR:ccay00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    125638126 (THBS1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 cEGF TSP1_ADAMTS TSP1_CCN Laminin_G_3 EGF Laminin_G_2 Motif Other DBs NCBI-GeneID:  125638126 NCBI-ProteinID:  XP_048709402 LinkDB All DBs Position 6:complement(67660470..67680490) Genome browser AA seq 1176 aa AA seqDB search MELSGGLFLLLMFGVCRANQIPESGGDDNSVFDLFELIGFTRKGAGRRATGVHLVKGPEP SSPAYRIEDASRIPAVPDDKFQDLLDAIYAEKGFILLATLRQAKKSRGTLLAVERKDSSG HIFNLVSNGKAGTLDLSLSGDGKQQVVSVEDALLATGHWKNITLFVQEDRAQLYVGCEKM ENAELDIPIQNIFTRDLASSAKLRIAKGGVNDNFQGVLQNVRFVFGTTLEAILRNKGCSS STSAIITLDNPINGSSPAIRTNYIGHKTKDIQAICGFSCDELTNMFVEMQGLRSMVTTLQ DRVRKVTEENELIAKVVQITPGVCIHNGILHKNKEEWTIDSCTECTCQNSATICRKVSCP LMPCSNATVPDGECCPRCWPSDYAEDGWSPWSEWTSCSVTCGNGVQQRGRSCDSLNNRCE GSSVQTRTCHIQECDKRFKQDGGWSHWSPWSSCSVTCGTGMITRIRLCNSPVPQMNGKPC EGEARETKSCQKDPCPINGNWGPWSPWDVCTVTCGGGIQKRGRLCNDPEPQYGGKDCIGD ATGTQVCNKQDCPIDGCLSNPCFAGTTCTSSPDGSWKCGACPTGYHGNGVQCKDIDECQE VPDTCFVLNGVHRCENTEPGYNCLPCPPRFTGTQPFGRGIEDATANKQVCKPRNPCTDGT HDCNKNAKCNYLGHFSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHCK KDNCPNLPNSGQEDYDKDGIGDACDNDDDNDNIPDDRDNCAFIYNPQQYDYDRDDVGDRC DNCPYNHNPDQIDTDNNGEGDACAVDIDGDGILNERDNCQYVYNVDQRDTDLDGVGDQCD NCPMEHNPDQEDSDSDRIGDKCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDAC DHDDDNDGIPDDKDNCRLVANPDQTDSDGDGRGDACKDDFDQDNVPDIDDICPENVDISE TDFRRFQMVPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNAVDFSGTFFI NTERDDDYAGFVFGYQSSSRFYVVMWKQITQSYWDSTPTKAQGYSGLSIKVVNSTTGPGE HLRNALWHTGNTAGQVRTLWHDPRHVGWKDFTAYRWRLSHRPKTGYIRVVMYEGKKIMAD SGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDP NT seq 3531 nt NT seq  +upstreamnt  +downstreamnt atggagctatcgggcggacttttcctcctcctaatgtttggtgtctgcagagcaaaccag atcccagagtctgggggcgatgataacagtgtgtttgatctcttcgaactcatcggcttc actcgcaagggggccggacgtcgggcaactggggtgcacttggtgaagggacctgagccc tccagccctgcttaccgcattgaggatgccagccgcatcccagccgtgcctgatgacaag ttccaagatttgctggatgccatctatgctgagaagggcttcatcttgttggctaccctc cggcaggccaaaaagagccggggcaccctgctggccgtggagcgcaaggacagctctggc catatcttcaacctggtgtctaacggcaaggcaggcaccctagacctgagcctgtctggt gatggcaagcagcaggtggtgtcagtggaggatgccctgctggccactgggcactggaag aatatcaccctgttcgtgcaggaggaccgggcccagctgtacgtagggtgtgagaaaatg gagaatgctgaactggacatccccatccaaaacatcttcaccagggacctggccagcagt gccaagctccgcatcgccaagggtggtgtcaatgacaacttccagggagtgctgcagaat gtgcggtttgtctttggaacaaccctggaggccatcctaaggaacaaaggttgctccagc tccactagtgcgatcattacattggacaatcccatcaatggctccagtccagctatccgt actaattacattggccacaaaacaaaggatatccaggcaatctgtggcttctcctgtgat gaacttacaaatatgtttgtggaaatgcaaggattgcggtccatggttacaacacttcaa gacagagtgcgtaaagtgactgaagaaaatgaattgattgccaaagtagtgcagatcact cctggtgtgtgcattcataatggaattctgcacaaaaataaagaagagtggactattgac agctgcactgaatgtacttgccagaattctgccactatatgcaggaaagtgtcttgccct ctcatgccttgttctaatgccactgttcctgatggggagtgctgcccacgatgctggccc agtgactatgcagaagatggctggtccccttggtctgagtggacttcatgctctgtgacc tgtgggaatggggttcagcagagaggccgctcttgtgatagtctcaataatcgctgtgaa ggttcctctgtgcagactcgcacctgccacattcaggagtgtgataagaggttcaaacag gatggtggttggagccactggtcgccatggtcatcatgttctgttacctgtggcactggc atgatcactagaatccgtctttgcaactctccagtcccacagatgaatggcaaaccgtgt gagggtgaggcaagagaaaccaaatcatgccagaaagatccttgcccaataaatggaaac tggggaccctggtctccatgggatgtatgtacagtcacatgcggaggaggcattcaaaaa cgtggacgtctctgcaatgaccctgagcctcagtatggtgggaaggactgcataggtgat gccaccgggacccaggtctgcaacaagcaggactgtccaattgatggatgcctatctaat ccctgctttgcgggaacgacatgtaccagctcccctgatggttcctggaagtgtggtgcc tgccctactggttaccatggcaatggtgttcaatgcaaagatattgatgagtgtcaagag gttcctgatacctgctttgtcctcaatggcgtgcacaggtgtgagaacactgaacctgga tacaactgcttgccttgcccaccacgtttcactggaacacagccttttggtcggggtatt gaggatgccacagctaacaagcaggtctgcaaaccacgtaatccatgcacagatggaact catgattgcaacaagaatgccaagtgcaattaccttggccacttcagtgaccccatgtac cgctgtgagtgtaaaccaggctatgctggcaatggcataatctgtggagaagatactgat ttagatggatggccaaatgagaaccttgtctgcgttgccaatgccacttaccactgcaaa aaagataactgtcccaatcttcccaactctgggcaggaagactatgataaggatggaatt ggtgatgcatgcgataatgatgatgataatgataacattccagatgacagggacaactgt gcattcatttacaacccacagcagtatgactatgatagggatgacgttggtgaccgctgt gataactgcccctacaatcacaaccctgatcagattgacactgataacaatggagaagga gatgcatgtgctgtggatattgatggagatggcattcttaatgaaagggacaactgccaa tatgtctacaacgtagaccagagggatacagatttggatggtgttggggatcagtgtgac aactgccctatggaacacaatccagaccaggaggattctgactctgaccgcataggtgat aaatgtgacaacaatcaggacatagatgaagatggccatcaaaataacctagataactgc ccctatgtgcccaatgctaatcaagctgaccacgacaaggatggcaaaggtgatgcctgt gaccatgatgacgacaatgatggtatccctgatgacaaagataactgcagactggttgcc aacccagaccagactgactctgatggtgatggacgtggagatgcttgcaaagatgacttt gaccaagacaatgtgccagacattgatgacatctgccctgagaatgttgacatcagtgag acagacttccgtcgatttcagatggttcccctggatcctaagggaacatcgcaaaatgat cctaactgggtggttcgtcaccagggtaaagagctggttcagactgtcaattgtgatcct ggacttgcagtgggatttgatgaattcaatgctgtggacttcagtggcacattcttcatc aatacagaaagggatgatgactatgctggctttgtatttggttatcagtctagcagccgt ttctatgtagtcatgtggaagcagatcacccagtcctattgggactcaacaccaaccaaa gctcagggatactcaggtctttctatcaaagttgtgaactctaccacaggtcctggagag caccttcgaaatgctctgtggcacacaggaaacaccgctgggcaggtgcggaccttgtgg catgatcctcgtcacgtaggttggaaagattttactgcctacagatggcgtcttagccac agaccaaagactggctacattagagttgtaatgtacgaagggaagaaaatcatggctgat tcaggaccaatctatgataaaacttatgctggtggtcggttaggattatttgtcttctct caagaaatggtgttcttctcagatcttaaatatgaatgcagagatccataa

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