Couchioplanes caeruleus: COUCH_07515
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Entry
COUCH_07515 CDS
T08133
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccaz
Couchioplanes caeruleus
Pathway
ccaz03030
DNA replication
ccaz03410
Base excision repair
ccaz03420
Nucleotide excision repair
ccaz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
COUCH_07515 (ligA)
03410 Base excision repair
COUCH_07515 (ligA)
03420 Nucleotide excision repair
COUCH_07515 (ligA)
03430 Mismatch repair
COUCH_07515 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccaz03032
]
COUCH_07515 (ligA)
03400 DNA repair and recombination proteins [BR:
ccaz03400
]
COUCH_07515 (ligA)
Enzymes [BR:
ccaz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
COUCH_07515 (ligA)
DNA replication proteins [BR:
ccaz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
COUCH_07515 (ligA)
DNA repair and recombination proteins [BR:
ccaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
COUCH_07515 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
COUCH_07515 (ligA)
MMR (mismatch excision repair)
DNA ligase
COUCH_07515 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
COUCH_07515 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
HHH_8
DUF3701
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UQU68426
LinkDB
All DBs
Position
1576023..1578173
Genome browser
AA seq
716 aa
AA seq
DB search
MAEEVAAGQPTAEQIAAAGAEPTPEASARHAELSEEVRGHQYRYYVLDSPTVSDAEFDKL
LRELQELEDQFPALRTPDSPTQNVGGTFSTQFTAVEHAERMMSLDNVFDDAELAGWAERT
ERDAGGPVEFICELKVDGLAINLTYEKGRLVRGATRGDGRTGEDVTSNVRTIREIPERLA
GENPPDLLEVRGEIYFPASAFADLNASLVEQGKAPFANPRNAAAGSLRQKDPRITASRGL
RMVVHGIGARKGFTPDSQAHAYEALKAWGLPTSERWKLVPDMAGVREYIAYYAEHRHDVE
HEIDGVVVKVNSVAIQGRLGSTSRAPRWAIAFKYPPEEVTTKLLDIDVNVGRTGRVTPFA
VLEPVRVAGSTVALATLHNAREVERKGVWIGDTVVLRKAGDVIPEVLGPVMDLRPDDARP
FVMPTECPACGTKLAPAKESDIDIRCPNTRSCPAQLRERVFHLAGRGAFDIEVLGYKAAQ
ALLESQIIADEGDLFAITADDLQRSPFFVNKDGSLGSNAVKLLENLEEAKHRPLWRVLVA
LSIRHVGPTAAQALARHFGSMEALETAVAEARVEELSAVEGVGPTIAESLREWFAVDWHR
DIVAKWRTAGVQMEDERTDEGPRPLEGLTVVVTGTLASYSRDAATEAVTSRGGKVSGSVS
KKTAFVVVGDNPGSKYDKALQLKVPVLDEDGFGVLLSDGPDAARAVAEIGETPPKE
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaggaggtcgccgccgggcagcccacagccgagcagatcgcggccgccggtgcc
gagccgacgcccgaggccagcgcccgtcatgcggagctgagtgaggaggttcgcgggcat
cagtaccgctactacgtcctcgactcgccgactgtctccgatgccgagttcgacaagctg
ctgcgggagttgcaggagctcgaggatcagttcccggccctgcgcacgcccgactcgccc
acccagaacgtgggcggcacgttctccacgcagttcacggcggtcgagcatgccgagcgg
atgatgtcgctcgacaacgtcttcgacgatgccgagctcgccgggtgggcggagcgtacc
gagcgggacgccggcggtccggtcgagttcatctgcgagctcaaggtcgacggcctggcc
atcaacctgacgtacgagaagggcaggctcgtccgcggtgcgacgcggggcgacgggcgt
acgggtgaggacgtcacctcgaacgtgcgaaccatccgggagatcccggagcggctcgcc
ggcgagaatccgcccgacctgctcgaggttcgcggcgagatctacttccccgcgtccgcg
ttcgccgacctcaacgcctctctcgtcgagcagggcaaggcgccgttcgccaacccgcgc
aacgcggccgcaggcagtctgcgccagaaggaccctcgcatcaccgcgtcacgagggctt
cggatggtggtgcacggcatcggtgctcgcaagggcttcacccccgattcgcaggcgcac
gcgtacgaggcgttgaaggcttgggggctgccgacgagcgagcggtggaagctggtcccc
gacatggccggcgtgcgggagtacatcgcctactacgccgagcaccggcacgacgtcgag
cacgagatcgacggtgtggtcgtcaaggtgaactcggtggcgatccagggtcgcctcggc
tccaccagccgggcgccgcgctgggccatcgcgttcaagtacccgcccgaggaggtcacc
accaagctcctcgacatcgacgtgaacgtcggccggacggggcgggtcacgcccttcgcg
gtgctcgagcccgtacgcgtggccggctcgaccgtcgcgctcgcgaccctgcacaacgcc
cgcgaggtcgagcgcaagggcgtgtggatcggcgacaccgtcgtcctgcgcaaggcgggc
gacgtcatccccgaggtcctcggtccggtgatggacctgcgcccggacgacgcgcgcccc
ttcgtgatgccgaccgagtgcccggcgtgcggcacgaagctcgcgcccgccaaggaaagc
gacatcgacatccgctgcccgaacacgcgttcctgcccggcgcagttgcgcgagcgggtg
ttccacctggccggtcggggcgccttcgacatcgaggtgctcggctacaaggccgcgcag
gcgctgctcgagtcgcagatcatcgccgacgagggcgacctgttcgccatcaccgccgat
gacttgcagcggtccccgttcttcgtcaacaaggacggcagcctcggcagcaacgcggtg
aagcttctggagaacctcgaagaggccaagcaccgtccgctctggcgcgtgctcgtcgcg
ctctcgatccggcacgtcggccccaccgccgcgcaggcgctggcacggcacttcgggtcc
atggaagccctcgagaccgcggtggccgaggcccgcgtcgaggaactgtccgcggtggag
ggcgtcggcccgacgatcgccgagagcctgcgcgagtggttcgccgtcgactggcaccgt
gacatcgtcgcgaagtggcgcaccgccggcgtccagatggaggacgaacggacggacgag
ggcccccggccgctggaagggctcacagtcgtggtgacgggaaccctggcctcgtattcg
cgtgacgcggccacggaggcggtgacgtcccgcggcggcaaggtgagcggctcagtgtcg
aagaagacggcattcgtggtcgtgggcgacaaccccggcagcaagtacgacaaggcgttg
cagctgaaggttccggtgctggacgaggacggcttcggggtcctgctcagcgacgggccg
gacgcggcccgcgcggtggcggagatcggggagacgccgcccaaggagtga
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