Corynebacterium casei: CCASEI_02680
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Entry
CCASEI_02680 CDS
T03041
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ccg
Corynebacterium casei
Pathway
ccg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCASEI_02680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccg03021
]
CCASEI_02680
03400 DNA repair and recombination proteins [BR:
ccg03400
]
CCASEI_02680
Enzymes [BR:
ccg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCASEI_02680
Transcription machinery [BR:
ccg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CCASEI_02680
DNA repair and recombination proteins [BR:
ccg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CCASEI_02680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF6801
YlqD
Motif
Other DBs
NCBI-ProteinID:
AHI19119
LinkDB
All DBs
Position
543518..547513
Genome browser
AA seq
1331 aa
AA seq
DB search
MFDVNLFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
QCGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIITSVDDEARHNDLSTLEGEMLLEKKDVEDDVQAEIAERASKLEDD
LAALEAEGAKADARRKVQNAADKEMQHIRERGEREVQRLDEIWNTFNKLAPKQMIIDESI
YEELVDRYEDYFTGGMGAEAIQTLIRNFDLDAEAEELRDIINNGKGQKKMRALKRLKVVA
AFQRSGNDPAGMVLDSIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVSGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVENDYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVLLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSSNNILSPASGKPLAMPRLDMVTGLYFLTMNKREDEIGGN
GRYAPADENGPAQGVYSSYAEAIMAYDRGVLGLQAPIKVRIDHLRPTEAIEAAQFPDGWT
KGESWMAETTLGRIMFNELLPWNYPYLEGVMVRKGGSKDIVLLGDVINDLAIKYPMITVA
QVLDKMKDAGFYWATRSCVTITMHDVLVLPNKTEMLESYEKEAERIERKYWDQGALTERE
RYDRLVELWKDATDSVGNAVEALYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG
DYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRED
DCGTRQGVRVPIGEEVAEGTYAVHELWETSASGRVVATDVKDAEGNVVAEAGADLTEELT
DKLVNAGVTEVKVRSVLTCQTPAGVCAKCYGKSMASGQLVDIGEAVGIVAAQSIGEPGTQ
LTMRTFHQGGVGGDITGGLPRVQELFEARNPKNRAPIASVDGTISLSDEGNFWTLTITPD
DGSDNVVYEKLSKRQGLAQVRRPMESNPNAMIERSLRDGDHVTTGLRLMRGAADPHDVLE
VLGRRGVEKHLIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIDSGNTDLLPGTLVDL
SEARQINATMQAEGNEPAQLRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSD
KLIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARNAAYSIPTYGDSIYGDDGFGEFTG
ASVPLDEDFTF
NT seq
3996 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgacgtaaatctcttcgacgagcttcgtattggactggccaccgccgacgacatt
cgccgttggtctaagggcgaggttaagaagcctgagaccatcaactaccgcaccttgaag
ccagaaaaggacggccttttctgtgagcgtatctttggccctacccgtgactgggagtgc
cagtgcggtaagtacaagcgtgtccgctacaagggcattatttgtgagcgttgtggcgtt
gaggtcacgaagtccaaggttcgtcgtgagcgcatgggccacattgagctcgctgcgcca
gtaacccacatctggtacttcaagggtgtcccatcccgtttgggctacctgttggatctt
gctccgaaggacctggagcgcatcatctacttcgcagctaacatcatcacctctgttgat
gatgaggctcgccacaatgacctgtctactctcgagggcgaaatgctcttggagaagaag
gacgttgaggatgacgttcaggctgaaatcgctgagcgtgcttccaagctggaagatgac
ctggctgcactcgaggcagagggtgctaaggctgatgcccgccgcaaggttcagaatgct
gctgataaggaaatgcagcatattcgtgagcgcggtgagcgtgaggtacagcgtctggat
gaaatctggaacaccttcaacaagcttgctccaaagcagatgatcattgatgaatccatc
tacgaagagctggttgaccgctacgaggattacttcaccggcggcatgggcgcggaagct
atccagaccctgatccgcaacttcgacctcgacgcagaggcagaagagctgcgcgacatc
atcaacaatggcaagggccagaagaagatgcgtgcgctcaagcgcctcaaggttgttgct
gcattccagcgttcgggcaatgacccagctggtatggtcttggactccatcccagtgatc
ccaccagagctgcgcccaatggttcagcttgacggtggccgcttcgcaacctccgacttg
aacgacctttaccgtcgtgtcatcaaccgcaacaaccgcctcaagcgcatgatcgacctc
ggtgcacctgagatcatcgtgaacaacgagaagcgtatgttgcaggaatctgttgacgca
ctgtttgacaacggccgtcgtggccgcccagtctccggtcctggcaaccgtccactgaag
tccttgagcgacctgctcaagggtaagcagggtcgtttccgtcagaacctgctgggtaag
cgtgttgactactctggtcgttccgtaattattgttggtcctcagctgaagctgcacgag
tgtggtcttcctaagctgatggctctggaactgttcaagccattcgtgatgaagcgactg
gttgaaaatgactacgcgcagaacatcaagtccgctaagcgcatggttgagcgtcagcgt
ccagaggtatgggacgttctggaagaagcaatttctgagcacccagttcttttgaaccgt
gcaccaaccctgcaccgtctgggcatccaggcgttcgagccaaagctggttgagggtaag
gctattcagctgcacccactggcttgtgaagcattcaacgccgacttcgacggtgaccag
atggcagttcacctgccactgtccgcagaagcacaggctgaggctcgtgttctgatgctg
tcctccaacaacattctctccccagcgtcgggtaagccactggctatgccacgcctggac
atggtgaccggtctgtacttcctcaccatgaacaagcgcgaggatgaaattggtggcaac
ggccgctacgcaccagcggatgagaacggtcctgcacagggcgtgtactcctcctacgca
gaagccatcatggcttatgaccgtggtgtccttggcctgcaggctccaatcaaggttcgc
attgatcacctgcgtccaactgaggcaattgaggcagctcagttcccagacggctggacc
aagggcgagtcctggatggctgagaccaccctgggtcgcatcatgttcaatgagctcctg
ccatggaactacccataccttgagggcgtcatggtccgtaagggcggctccaaggacatc
gtcctgctcggtgacgtcatcaacgacctcgctatcaagtacccaatgatcaccgtggcg
caggtgctggacaagatgaaggatgccggtttctactgggcaacccgctcttgcgtcacc
atcaccatgcacgacgttctggttcttccaaacaagaccgagatgctcgagtcttatgag
aaggaagcagagcgcattgagcgcaagtactgggatcagggtgcgctgactgagcgtgag
cgctacgaccgtctggttgagctatggaaggatgcaaccgactccgtgggtaacgcggtt
gaggctttgtaccctgacgacaacccaattccgatgatcgttaagtctggtgcagcaggt
aacatgcgtcagatctggaccctggccggcatgaagggcatggttgtgaactctaagggt
gactacatcacccgtccgattaagacctccttccgtgaaggtctgtcggttctggagtac
ttcaacaactcccacggttcccgtaagggtctggcggataccgctctgcgtaccgctgac
tccggctacctgacccgtcgtctggttgacgttgcgcaggatgtcatcgttcgcgaagac
gactgtggcacccgtcagggcgttcgcgtcccaatcggcgaggaagttgctgaaggcacc
tacgctgttcacgagctgtgggagacctcagcttcgggccgtgttgttgcaaccgatgtc
aaggatgctgaaggcaacgttgttgctgaagcaggcgcagacctcactgaggaactgacc
gacaagctggttaacgcaggcgttactgaggtcaaggttcgctccgtgcttacctgccag
acaccagccggtgtttgtgcaaagtgctacggcaagtccatggcttctggccagctggtc
gatatcggcgaagccgtcggtattgttgcagcgcagtccattggtgagcctggtacccag
ctgacaatgcgtaccttccaccagggtggtgtcggtggcgacattaccggtggtctgcct
cgtgttcaggagctgtttgaggcacgtaaccctaagaaccgtgcaccaatcgcttctgtc
gatggcaccatctcgctgtctgatgaaggtaacttctggaccttgaccattactccggac
gatggttcggacaacgtggtctacgagaagctgtcgaagcgtcagggccttgctcaggtt
cgtcgcccaatggagtccaacccgaacgcgatgatcgagcgctccttgcgtgacggtgac
catgtcaccaccggtcttcgtctgatgcgcggtgcggctgacccacacgacgtgctcgag
gttctcggtcgccgtggtgtggaaaagcacctcattgatgaagttcaggctgtttaccgt
gctcagggtgtggccatccacgataagcacatcgagatcatcatccgtcagatgctgcgt
cgcggtaccgtcatcgattcgggtaacaccgacttgctgccaggtactctggttgacctt
tccgaggcacgccagatcaacgccacgatgcaggcagagggcaatgagccagcacagctg
cgttcagagatcatgggtattaccaaggcttccttggctaccgagtcttggctgtctgcg
gcgtccttccaggagaccacccgcgtgcttaccgatgccgctattaacaagcgctccgat
aagctaatcggcctcaaggagaacgtcatcatcggtaagctgatcccagctggtaccggt
atctctcgctaccgcaacatctccgttaagccaaccgaggctgcccgcaacgcggcatac
tcgattccgacttacggcgattccatctacggcgacgacggcttcggtgagttcaccggc
gcttccgtcccactggatgaggacttcaccttctaa
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integrated database retrieval system
