Corynebacterium casei: CCASEI_06230
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Entry
CCASEI_06230 CDS
T03041
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ccg
Corynebacterium casei
Pathway
ccg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCASEI_06230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccg03019
]
CCASEI_06230
03016 Transfer RNA biogenesis [BR:
ccg03016
]
CCASEI_06230
Enzymes [BR:
ccg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CCASEI_06230
Messenger RNA biogenesis [BR:
ccg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CCASEI_06230
Transfer RNA biogenesis [BR:
ccg03016
]
Prokaryotic type
tRNA degradation factors
CCASEI_06230
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
KH-I_KHDC4-BBP
KH_2
RNase_PH_C
Methyltransf_7
OB_cyt-4
Motif
Other DBs
NCBI-ProteinID:
AHI19822
UniProt:
A0ABM5PPH5
LinkDB
All DBs
Position
1342953..1345229
Genome browser
AA seq
758 aa
AA seq
DB search
MSPRNSGKAQTPNNQVSFARDEDFGTLEATAVLDNGDFGTRTITFETGQLARQADGSVTT
YFDDDTMLLTTVTASNQPREGFDFFPLTVDVEERMYAAGKIPGSFFRREGRPSTEAILAC
RLVDRPLRPTFVKGLRNEVQVINTVLSLDPAEYYDVIAINGSSAATQLSGLPVSGPVGGV
RMALLSDDKHPQGQWVAFPNAEQHERALFEMVVAGRIVTRKNKGKNVEDVAIMMVEAGAG
VHVHERIAEGAPAPQESTVAEGLEAAKPFIKSLCEAQAGLAERAAKEKKEFPLFPPFADE
VYDAVARKAEKKLGQLMTIAAKQEREDATNAHMEEVEAQLLEVFTEGDASKQIRAAYNQL
MKEIVREKILTEGFRIDGRAAEDIRDLGAEIGLIPRVHGSALFERGETQILGVTTLDMLK
MEQTIDSLTPVESKRYIHHYNFPPYSTGETGRVGSPKRREIGHGALAERALLPVIPSREE
FPYTIRQVSEALGSNGSTSMGSVCASTMSLYNAGVPLKAPVAGIAMGLVSGEVKGEERFV
ALTDILGAEDAFGDMDFKVAGTSDYITALQLDTKLDGIPSEVLANALQQARNAREEILDI
MAEGIDGPDEMSPQAPKITSIKIPVSKIGELIGPKGKTINTITEETGADVSIEDDGTVYV
SATTGEAADAAIEKVNAIANPQLPKVGERFLGTVVKTVAFGAFVSITPGRDGLIHISNLG
GDERIEKVEDVVNVGDKIQVEIADIDNRGKISLVPVEE
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgagcccacgcaatagcgggaaagcgcaaaccccaaacaaccaggtcagcttcgcacgc
gatgaagactttggcaccctcgaagcaaccgcagtcctagacaacggtgactttggtacc
cgcaccatcacctttgaaaccggccagcttgcccgccaagctgatggttctgtcaccact
tactttgatgatgacaccatgttgctgaccaccgtgactgcatccaaccagccacgtgaa
ggctttgacttcttcccactgaccgtggacgtggaagagcgtatgtacgcagccggcaag
atcccaggctctttcttccgccgcgaaggccgtccttctaccgaggcgatcttggcctgc
cgcctggttgaccgcccactgcgcccaaccttcgtgaagggcctgcgcaatgaggttcag
gtcatcaacactgttctgagcctggacccagcggaatactatgacgtcattgccattaat
ggctcctcggctgcaacccagctttctggtctgccagtctccggcccagtcggcggcgtg
cgcatggcgctgctttctgatgacaagcacccacagggccagtgggtagcgttccctaat
gctgaacagcacgaacgcgcactgtttgaaatggttgttgcgggccgtattgtcacccgc
aagaacaagggcaagaacgtcgaagacgttgccatcatgatggttgaagctggcgctggc
gttcacgttcatgagcgcattgctgagggtgctccagcaccacaggaatccaccgttgct
gagggcctggaagcagcaaagccattcatcaagtccctatgtgaagcacaggcaggtttg
gcggagcgcgcggcgaaggagaagaaggaattcccactcttcccaccattcgctgatgag
gtctacgacgcagtcgctcgcaaggctgagaagaagctcggtcagctgatgaccattgct
gcgaagcaggagcgcgaggatgcaaccaacgcgcacatggaagaagtagaagcacagctt
cttgaggtcttcaccgaaggtgatgcttccaagcagatccgtgctgcatacaaccagctg
atgaaggaaatcgtgcgtgagaagatcctcaccgaaggtttccgcattgatggccgtgca
gcagaggacatccgtgacttgggcgctgaaatcggacttattccacgcgttcatggttcg
gcactgtttgagcgcggtgagacccagattcttggtgtgaccactttggacatgctgaag
atggagcagaccattgactccctgaccccagttgagtccaagcgctacatccaccactac
aacttccctccatactccaccggtgagaccggccgcgttggttctccaaagcgccgcgaa
atcggccacggtgcacttgcggagcgcgcactcttgccagttatcccttcccgtgaggag
ttcccatacaccatccgccaggtatctgaggcgcttggttccaacggttctacctccatg
ggttctgtctgtgcatccaccatgtccctgtacaacgcaggtgttccactgaaggcacca
gttgcaggtatcgcgatgggcttggtttccggtgaggtcaagggcgaagagcgcttcgtt
gctttgactgacatcctcggcgctgaggacgcattcggcgacatggactttaaggttgcc
ggcaccagcgactacatcactgcactgcagctggacaccaagttggacggtattccttct
gaggttctggctaacgctttgcagcaggcacgcaacgcgcgtgaggaaatcttggacatc
atggctgagggcattgatggtccagatgagatgtccccacaggcgccaaagatcacctcc
atcaagattccagtttctaagattggtgagctgatcggccctaagggcaagaccatcaac
accatcaccgaagaaaccggcgctgacgtttccatcgaagatgacggtactgtttacgtt
tctgctaccaccggtgaagcggctgacgcggcaattgagaaggtcaacgctatcgcgaac
cctcagctgccgaaggtcggcgagcgtttcttgggcaccgttgtaaagaccgttgccttc
ggcgcattcgtgtccatcaccccgggccgtgacggtctgattcacatctccaacctcggt
ggcgatgagcgaattgaaaaggtcgaggacgttgtcaacgttggcgacaagatccaggtt
gaaatcgcggacattgacaaccgcggcaagatctccctggttccagtcgaggaataa
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