Corynebacterium casei: CCASEI_06600
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Entry
CCASEI_06600 CDS
T03041
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
ccg
Corynebacterium casei
Brite
KEGG Orthology (KO) [BR:
ccg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CCASEI_06600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccg03021
]
CCASEI_06600
Transcription machinery [BR:
ccg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CCASEI_06600
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HC2
KCT2
Motif
Other DBs
NCBI-ProteinID:
AHI19892
UniProt:
A0ABM5PPP5
LinkDB
All DBs
Position
complement(1421184..1422602)
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AA seq
472 aa
AA seq
DB search
MAATESSDQAFSEGAEEAPAVKTPAKKTAKKTAKKTAKKTAKKTAKKTAKKTARKTTAKK
TVRKSAASKATSPEKASAESDDEEALEEQEVDANEEDVDQKETDFDPDAAEMDEGEFGEP
DEELEAEEDEEESEEDAGASVWDEDESATLRQARKDAELTASADSVRAYLKQIGKVALLN
AEQEVSLAERIEAGLYAQHRLDDMERLIAEGDAAAKLSPAQKRDLRWIARDGRKAKNHLL
EANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAIT
RAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEEKVLEIQQY
AREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLTTLSEREAGVVR
LRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
gtggcagccactgaatcttcagaccaggctttcagcgagggtgcagaggaagctcctgca
gtaaagacccctgccaaaaagacggcgaagaaaacggccaagaaaaccgctaagaagacg
gcgaagaaaacggccaaaaagaccgctaagaaaaccgctcgcaagactacggccaaaaag
actgtccgtaagtctgcagcttcaaaggcaacttctcctgagaaggcttctgcagaatcc
gatgacgaagaggcattggaagagcaggaagtcgacgcaaacgaggaagacgtagatcag
aaagaaactgatttcgatcctgatgcagcggagatggatgagggcgaattcggcgagccg
gatgaagagctcgaagccgaggaggatgaggaagagtccgaggaggacgctggcgctagc
gtttgggacgaggacgaatccgcaaccttgcgtcaggcgcgtaaggacgctgagctcacc
gcttcggctgactccgtccgtgcttatctgaagcagatcggtaaagttgcgctgctgaat
gctgagcaagaggtttctctcgcggagcgcattgaggcgggcttgtacgcacagcaccgt
ctcgatgacatggagcgcttgattgcggaaggtgacgcggctgcgaagctgtcgcctgcg
caaaagcgcgaccttcgttggattgcccgtgatggccgcaaggctaagaaccacctgctg
gaagcaaaccttcgtctggttgtttcgctggctaagcgctacaccggccgcggcatggca
ttcttggatttgatccaggaaggcaacctgggccttatccgagcagtcgagaagttcgac
tacaccaagggctacaagttctctacctacgctacgtggtggatccgtcaggctattacc
cgcgctatggcagaccaggcacgtactattcgtatcccggtccacatggttgaggtcatc
aacaaactcggccgaatccagcgtgagctgttgcaggatctgggccgcgagccaaccccg
caggagttggcgaaggaaatggatatcaccgaggaaaaggtgctggagatccagcagtac
gctcgtgagccaatttctcttgaccagactattggtgatgagggcgattcccagctgggt
gacttcattgaggactccgaggcagtcattgctgtcgatgcagtctcgttcaccctgctc
caggatcagctccaagacgtgttgactactctgtctgagcgcgaggcaggcgttgtacgc
cttcgcttcggcctgaccgacggcatgccgcgtactttagacgaaatcggtcaagtttac
ggtgttactcgtgaacgtattcgccagattgagtcgaagacgatgtcgaagcttcgccac
ccatcgcgttcgcaggttctgcgcgactacttggactag
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