Corynebacterium casei: CCASEI_08675
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Entry
CCASEI_08675 CDS
T03041
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ccg
Corynebacterium casei
Pathway
ccg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCASEI_08675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccg03021
]
CCASEI_08675
03019 Messenger RNA biogenesis [BR:
ccg03019
]
CCASEI_08675
Transcription machinery [BR:
ccg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CCASEI_08675
Messenger RNA biogenesis [BR:
ccg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CCASEI_08675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
NACHT
S1CSD-TOTE-2
CDC27
Motif
Other DBs
NCBI-ProteinID:
AHI20298
UniProt:
A0ABN4CF25
LinkDB
All DBs
Position
complement(1883006..1885231)
Genome browser
AA seq
741 aa
AA seq
DB search
MSDTDINSAKDLAPLKLTELRAMAAKKGLRGISGLRKGDLITAIISGQVPGKAAAAAEDK
PAKAAPRASKAAKKESTAEAASAAPANVAEASADNTAGDNNAGDKDDKAKQSTRRPRRVV
RSNSAARAEDSSAGEKDQAADTSSTDKAGDNQQSQDGDGNEDHRYDSRSQARRARRNRAR
RNEQQNQDDSSNSADWQGSSDNNASGNQQDSGNDHHNDGDQGDSSNDGDNRNNRQRGGRN
NNRRNDRNDNRDNRGNGRNDNRNDNRNDNRGGDDNDGDNRGGRNNDSRGGRNNNGNNGNS
GNSGNSGNSSNNGDDDNARRGRRGRRNRRNRGGNEGQGGHGNNDMQIREGDELQAVGGIL
EVVDNNVAFLRTTGYRAMSSDVFVNNNLVRRLGLRSGDAVTGQVKVGGATHSHGNGRNRR
KYNQLVRVDTINGLDPEQTKNRPDFSKLTPLYPNQRLRLETTPNILTTRVIDLIMPIGKG
QRALIVSPPKAGKTTILQNIANAIATNNPECYLMVVLVDERPEEVTDMQRSVKGEVISST
FDRPPSEHTAVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNSSPASGRILSGGVDS
NALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRSISE
RRVFPAVDVNPSGTRKDELLLVPEEARIMTKLRRILSGLDSHQSIDLLIKQLKKTKSNGE
FLMGVATSAPMAASLDEEEYS
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgatacggacatcaattccgcaaaggatttggcccccctgaagctaactgagctg
cgcgcaatggcagccaagaagggattgcgtggaatttcaggtttgcgcaaaggcgacctg
attaccgcaattatctccggccaggtgccgggtaaggcagccgctgcagcagaggacaag
ccagctaaggccgcccctcgcgcatcaaaggcagcgaagaaagaaagcactgctgaagca
gctagtgcagcgccagcaaacgttgcagaggcttctgcagataacaccgccggtgataac
aatgctggtgacaaggatgacaaggcaaagcaaagcacccgtcgtccacgccgtgtagtc
cgctctaacagcgctgcacgcgctgaggattcttccgcgggagagaaggaccaggctgcg
gacaccagcagcactgacaaagctggtgacaaccagcagtcgcaggacggcgatggaaac
gaagatcaccgttatgattctcgttcgcaggcacgtcgcgcgcgccgcaaccgtgcccgc
cgcaacgagcagcaaaatcaggatgattcttcgaattctgctgattggcagggttcctcg
gacaacaatgcctccggaaaccagcaagactccggcaatgatcaccacaatgatggtgat
cagggcgatagctccaacgacggtgacaaccgcaataaccgtcagcgcggtggccgcaac
aataaccgtcgcaatgatcgcaacgacaaccgcgacaaccgcggtaatggtcgcaacgac
aaccgtaatgacaaccgcaacgataatcgtggtggcgatgacaatgacggtgacaaccgt
ggtggtcgcaacaacgatagtcgcggtggccgtaacaacaacggcaacaacggcaacagc
ggcaatagcggcaacagcggcaatagcagcaataacggtgatgatgacaacgcacgccgc
ggtcgtcgtggtcgtcgcaaccgtcgtaaccgcggtggcaatgaggggcagggcggacat
ggcaacaatgacatgcagatccgcgaaggcgatgagctgcaggcagtcggcggcatcctc
gaggttgtagacaacaacgttgcattcttacgcaccactggttaccgcgcgatgagcagt
gacgtgtttgtgaacaacaacctggttcgtcgtctggggctgcgctccggtgacgctgtg
accggtcaggtcaaagttggcggcgcaacgcactcacacggcaacggacgtaaccgccgc
aagtacaaccagttggtacgcgtggacaccatcaatggtttggatccagagcagaccaag
aaccgtccggacttctccaagctgacgccgctgtacccgaaccagcgtctgcgtttggag
accactccaaacattttgaccactcgtgtcattgacttgatcatgcctattggtaagggc
cagcgtgcgctgattgtatccccaccaaaggccggtaagaccactatcttgcaaaacatt
gcgaacgctatcgctaccaacaacccagagtgctacctcatggttgtgctggttgatgag
cgtcccgaagaagttactgacatgcagcgctcagtcaagggtgaggttatttcctccact
ttcgaccgtccaccatcagagcacaccgcggtggctgagttggccatcgagcgcgcaaag
cgtctggtggagcagggcaaggacgttgtggttctgctggactccattactcgtctgggc
cgtgcctacaacaactcctcaccagcatcgggccgtatcctgtccggtggtgtggattcc
aacgcactgtacccaccaaagcgtttcttgggtgctgcccgcaacatcgaaaacggtggt
tctttgaccatcatcgcaaccgcgatggtggagaccggttccactggtgacacggtcatc
ttcgaggaattcaagggtaccggcaacgctgagctgaagctggatcgttctatctctgag
cgtcgtgtcttcccagctgtagacgttaatccttcgggcacccgtaaggatgagctgttg
ctggttccagaagaggcgcgcatcatgaccaagctgcgtcgcatcctgtccggtctggat
tctcaccagtctattgacttgctgattaagcagctgaagaagactaagtccaatggtgaa
ttcctcatgggcgttgcaacttcagctcctatggcggcaagtttggatgaggaggaatac
tcctaa
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