Chlorobium chlorochromatii: Cag_0275
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Entry
Cag_0275 CDS
T00290
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cch
Chlorobium chlorochromatii
Pathway
cch03030
DNA replication
cch03410
Base excision repair
cch03420
Nucleotide excision repair
cch03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cag_0275
03410 Base excision repair
Cag_0275
03420 Nucleotide excision repair
Cag_0275
03430 Mismatch repair
Cag_0275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cch03032
]
Cag_0275
03400 DNA repair and recombination proteins [BR:
cch03400
]
Cag_0275
Enzymes [BR:
cch01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Cag_0275
DNA replication proteins [BR:
cch03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Cag_0275
DNA repair and recombination proteins [BR:
cch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Cag_0275
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cag_0275
MMR (mismatch excision repair)
DNA ligase
Cag_0275
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cag_0275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_pol_A_CTD
Auto_anti-p27
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ABB27551
UniProt:
Q3ATX4
LinkDB
All DBs
Position
302186..304189
Genome browser
AA seq
667 aa
AA seq
DB search
MTIIDASERIAQLRQEIERHNYLYFNEAKPELSDYEFDKLLEELMALEREFPDLLTPDSP
SQRVGGTITKEFPVVTHREPMLSLANTYSAGEVAEFYNRVAKLLAAENVHKQEMVAELKF
DGVAISLLYRDGVLVRGATRGDGVQGDDITPNIRTIASIPLRLHQPLAGEVEVRGEIFMR
KEDFEQLNDNRPEEERFANPRNATAGTLKLQDSAEVARRRMNFVAYYLKGLKDETLDHVS
RLHKLEALGFTTGGHYRRCKTIEEINTFINEWEEKRWKLPYETDGVVLKLNNVQLWEQLG
ATAKSPRWAIAYKYPAQQARTQLCNVVFQVGRIGTITPVAELTPVLLAGSTVSRSTLHNF
DEIERLSVMILDYVMIEKSGEVIPKVVRTLPDERPADAHAIAIPTHCPECDTPLIKPENE
VSWYCPNEEHCPAQIRGRLLHFASRNAMDIKGLGDALVEQLVAWGLVHDVGDLYLLQEPQ
LERMERMGKKSAQNLIRALDESRTRSYDRLLYALGIRHVGRATARELAHAFPTLDALMQA
NEERLAEVPDIGTTVAQSIVDFFAKPSSRQLVDKLREARLQLAASASKIEQVNRNFEGMS
LLFTGTLERYTRQQAAELVVERGGRVVESISKKTSLLVAGRDGGSKLDKAHKLGVRVISE
DEFMGMM
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaccattatagatgcctctgaacgcattgcgcagcttcgccaagaaatagagcgccat
aactacctttattttaacgaggctaaacctgagctttccgactacgagttcgataagctg
cttgaagagctgatggcgcttgagcgtgaattccccgatttgctgacgcccgatagccca
tcgcagcgagttggcggcactatcacgaaggagttccccgttgtaacgcaccgtgaacct
atgctaagccttgccaacacctattcggctggcgaggttgcggagttttacaaccgtgtt
gctaaactgcttgcggctgaaaatgtgcataagcaggagatggttgccgagctaaagttt
gatggcgttgctattagtttgctctatcgcgatggtgtattagtgcgcggagcaacgcga
ggcgatggcgtgcaaggcgacgatattacccccaacattcgcaccattgcctccattccg
cttcgcctccatcagccgcttgctggcgaggtagaggtgcggggcgaaatttttatgcgc
aaagaggattttgagcaattgaacgataaccgtcccgaagaggagcgatttgccaatcca
cgcaatgccacggctggtacgctgaaattgcaagattcggctgaagtggctcgtcgccgc
atgaattttgtggcatactatcttaaaggattaaaggatgaaacgctggatcacgtcagt
cgtcttcataagcttgaagcgcttggctttacaacgggtggacattatcgtcgttgtaaa
acaatagaagagatcaacacctttattaatgagtgggaggaaaagcgctggaaattgcct
tacgaaaccgatggtgtggtgcttaaactcaataacgtgcaactttgggagcagcttggc
gctaccgcaaaaagccctcgttgggcaattgcctacaaatatcccgctcaacaagcccgc
acgcagctttgtaacgtggtgtttcaagtgggacgtattggcaccattacgcctgttgcc
gaactaacgcccgtactgcttgcaggctccaccgtttcacgctccacgctacacaatttt
gatgaaattgagcggcttagcgttatgattctcgattatgtgatgattgaaaagtcgggc
gaagtgatccccaaagtagtgcgcaccttacccgatgaacgccctgctgacgcgcacgcc
attgccattcccacccactgccccgaatgcgatacgccgcttatcaaacctgaaaatgag
gtaagctggtactgcccaaatgaggagcattgccccgcacaaattcgtggacgcttgctg
cactttgcttcccgcaacgccatggatattaaaggacttggagatgcacttgttgagcag
cttgttgcttggggattagtacacgatgttggcgacctctatctcttgcaagaaccacaa
cttgagcgtatggaacgcatgggcaaaaaatccgcccaaaaccttattcgtgctcttgac
gaaagccgcacgcgcagctacgaccgcctactctacgcactcggcattcgccacgttgga
cgcgccactgctcgcgaacttgcccacgccttccccacgcttgatgccctcatgcaagcc
aatgaagagcgacttgccgaagtgcccgacattggcacaaccgttgcgcaaagcattgtg
gactttttcgctaaaccatcctcccgtcaattggttgataaactccgtgaagctcgcttg
caacttgccgcctcagcaagtaagattgagcaagtaaaccgcaattttgaaggtatgagc
ctgctctttaccggcacgcttgaacgctacacacgccaacaagctgccgaacttgttgtg
gaacgaggaggacgtgtggttgaaagcatcagcaaaaaaacctcacttcttgttgctggt
cgcgacggcggcagcaagcttgacaaagcgcacaagctcggcgtgcgagtgatttcggag
gatgagtttatggggatgatgtaa
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