Cohnella cholangitidis: FPL14_10780
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Entry
FPL14_10780 CDS
T07708
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cchl
Cohnella cholangitidis
Pathway
cchl03030
DNA replication
cchl03410
Base excision repair
cchl03420
Nucleotide excision repair
cchl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cchl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FPL14_10780 (ligA)
03410 Base excision repair
FPL14_10780 (ligA)
03420 Nucleotide excision repair
FPL14_10780 (ligA)
03430 Mismatch repair
FPL14_10780 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cchl03032
]
FPL14_10780 (ligA)
03400 DNA repair and recombination proteins [BR:
cchl03400
]
FPL14_10780 (ligA)
Enzymes [BR:
cchl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FPL14_10780 (ligA)
DNA replication proteins [BR:
cchl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FPL14_10780 (ligA)
DNA repair and recombination proteins [BR:
cchl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FPL14_10780 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FPL14_10780 (ligA)
MMR (mismatch excision repair)
DNA ligase
FPL14_10780 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FPL14_10780 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
QMV41612
UniProt:
A0A7G5BXC8
LinkDB
All DBs
Position
complement(2260727..2262757)
Genome browser
AA seq
676 aa
AA seq
DB search
MAQTELLERMRKLVAELNAHSHRYYTEDNPTISDKEYDVLYDELNRLEAESGTVLPDSPT
RRVGGDILKGFEPHRHLSRLWSLDKAQNVEDLTAWAARANRLIADYNAKNPDRPLPPAEY
VLELKFDGLSLNLTYGDGGLTQAATRGNGEVGEGILAQVRTIRTVPLTIGFEEGTIEVQG
EGFMRLSVLEEYNKTAAEPLKNARNGAAGALRNLDPKVTASRRLDAFFYNVGYAEGISFG
NHREMMAFLRDNRFPVNPYIAYFSTIEDLIAELDHIVERRGQLDYLIDGAVIKLTDMRTR
EALGYTDKFPRWAVAFKFEAEETTTVLESVSWELGRTGKVTPLARVEAVELAGVTVQNCT
LNNIGDIERKNLSHALGTRVFIRRSNDVIPEILGKADDEEGGTIEVPVVCPGCGSPLEMR
GAHLFCNNRLGCKPQIIGRITHFASRDCMDIETFSGKTAEQLYDELNVREPADLYGLSFD
DLVKLQRFGEKKATNLLAALEKSKSRGLASFLNALGIPNTGKATTKMLADHFGDLDRLMA
AEADELVGLPDVGGIVAESIYSFFRDPLAQESIARMRAYGVKAEAAAPAAVAADASHPLF
GKTVVLTGTLSVMTRDEAAKKLEALGAKVSGSVSKKTDLVIAGESAGSKLTKARDLGVPV
LEDESELLRLLGGTND
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaacggaattgctggagcggatgcggaagctcgtagctgaacttaacgcgcat
agccatcgttactacaccgaagataatccgacgattagcgataaagaatatgatgtgctc
tatgatgaactgaatcgattggaggcggagagcggaacggtattgcccgattctccgact
cgcagagtcggcggggatattcttaagggattcgagcctcaccggcatctgtcccggcta
tggagcttggacaaagcgcagaacgttgaagacttaaccgcttgggcggctcgggccaat
cgcctgattgccgactataatgccaagaacccggatcggccactgcctcccgcggagtac
gtgctggaactcaagttcgatgggttgtccttgaatttgacttatggcgatggcggactg
acgcaagcggcgaccagggggaacggcgaggtcggggaagggatacttgcccaagttcgg
acgattcgcaccgttccgctgacgatcggtttcgaagaaggtacgatcgaggttcaggga
gaaggcttcatgcgcttgtccgtgctcgaagaatataacaaaaccgcggcggaaccgctg
aagaatgcgcgcaacggtgcagcgggagcccttcgcaaccttgatcctaaagtaacggcg
tcgcgcaggctggatgccttcttctataacgtggggtatgccgaagggatttcgttcggc
aatcaccgcgagatgatggcgttcttgcgggacaaccggtttcccgtcaatccttatatc
gcttacttctccactattgaagacctgatcgcggagcttgatcatatcgtggagagacgc
ggacaactggattatctcattgatggtgcggtcattaagctgaccgacatgaggacgcga
gaagctcttggctatacggacaaattccctcgttgggccgtagcgttcaaattcgaggcg
gaagagacgacgacggttcttgaatcggtatcgtgggagcttggccgaacggggaaagtg
actccgttagcccgcgtagaggcggttgagcttgccggggttacggttcagaattgtacg
ctgaacaatatcggagatattgagcgcaagaacctgtctcatgcgctgggaacccgtgtg
ttcattcgccgttccaacgacgtcattcccgagattctaggcaaggccgatgacgaggaa
ggcggtacgatcgaggttccggtcgtttgcccgggttgcggttctccgctggagatgagg
ggagcgcatctattctgcaacaaccgattaggttgcaagccgcaaatcataggacggatc
actcacttcgcgtctcgcgattgcatggatatcgagacgttcagcgggaaaacggccgag
caactatacgacgagttgaacgttcgcgagccggccgatctatacggtcttagctttgat
gatctggttaagcttcagcggttcggggagaagaaagcgacgaatttgttggccgccttg
gagaaatccaaatcccgcggacttgcatccttcctcaatgcgctaggcatcccgaataca
ggcaaagcgacgacgaaaatgctcgcggaccatttcggggacttggatcggttaatggct
gcggaagccgacgaattagtcgggttgccggatgtcggcggtatcgtggccgagagcatc
tacagcttcttccgagatccgctcgcgcaagagagcatcgcccgcatgcgcgcttatgga
gttaaagcggaagcggcggcgccggccgcggtcgcggcggatgcgagccatccgttgttc
ggcaaaaccgtagtgttaaccggtacgctatccgttatgacgcgcgatgaagccgctaaa
aagttagaagcgttgggagccaaagtgtcgggaagcgtgtccaagaaaacggatctcgtt
atcgccggcgaaagcgcgggaagcaaactgaccaaagcccgcgatctcggagttccggta
ctggaagacgagtcggaactgctgcgattgcttggcggaacgaatgactaa
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