KEGG   Coprinopsis cinerea (gray shag): CC1G_01381
Entry
CC1G_01381        CDS       T01275                                 
Name
(RefSeq) hypothetical protein
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
cci  Coprinopsis cinerea (gray shag)
Pathway
cci03018  RNA degradation
cci03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cci00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CC1G_01381
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CC1G_01381
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cci03019]
    CC1G_01381
   03041 Spliceosome [BR:cci03041]
    CC1G_01381
Messenger RNA biogenesis [BR:cci03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CC1G_01381
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CC1G_01381
Spliceosome [BR:cci03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CC1G_01381
 Complex C
  U2 snRNP components
    CC1G_01381
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 6014025
NCBI-ProteinID: XP_001837469
UniProt: A8NYM6
LinkDB
Position
5
AA seq 95 aa
MDPSASGIQEPFDLIRLSLSERVFVKLRGDREMTGILHAYDGHMNLILSDVEETIMIVDT
DAPNGQGVVNIAKRKMDMLFVRGDGVILVSPPART
NT seq 288 nt   +upstreamnt  +downstreamnt
atggatccctctgcttccggcattcaagaacctttcgatctgattagactgtctctgagt
gaacgcgtattcgtcaagctacgaggagatagggaaatgactggaattcttcatgcctat
gatggacatatgaatcttatcctcagtgacgtcgaagagaccatcatgatagtggatacc
gatgcacccaatggccagggagttgtcaacatcgcaaaacggaaaatggatatgctgttt
gtgagaggagatggcgtcattctcgtttctccccctgccaggacatga

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