Cinclus cinclus (white-throated dipper): 134041294
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Entry
134041294 CDS
T10813
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
134041294 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccic03400
]
134041294 (LIG4)
Enzymes [BR:
ccic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
134041294 (LIG4)
DNA repair and recombination proteins [BR:
ccic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
134041294 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
ATG17_like
Motif
Other DBs
NCBI-GeneID:
134041294
NCBI-ProteinID:
XP_062343809
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All DBs
Position
2:complement(83009642..83013892)
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AA seq
912 aa
AA seq
DB search
MASAPTSQPPPKKTVASHVPFADLCSTLEQIQKCKSRPEKTKYFKNFLDSWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAISNNNAAKNKGQLKKSLLHLI
SQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADIQQIEKQMGNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKGNIQNCILDGEMMAYNPDTQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSSVFNPLKGRIHIVHKRSARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVSGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAVAEMPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLSKHWKPYNRKDPP
GNILCGTEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAQGKLASKHLHIDEYDEPHEKKRKTVSKVRKKIGIAEQFKAPDLSSVSKV
SNVFEDVEFCVMTGMGKYSKCELENRIAQCGGSVAQNPGPETYCVIVGVENVRVKNIIAS
NKYDVVRAEWLLQCFQSKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTANTDVAQLK
EVFSRMKDNKAMPLDSIAELEERYWGNSCQLGILRGSTIYVDCYAVVNEPKSKIPGTTLS
VRALELRFYGAKVVSHLEEGVSHVVVGEDYSRVEKMKALRRTFRKKFKIVSELWVTHSVE
EGVAKNENQYLV
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctacttcacagcctcctcctaaaaaaacggtggcctctcacgtgcct
tttgcagatctgtgttctactctggagcaaatacagaagtgtaaatctcgtccggagaaa
accaagtatttcaagaattttttggattcctggaggaaattccatgatgcacttcatcaa
aaagagaaagatgtcacagattccttttacccagctatgcgacttattctcccacagttg
gaaagagagaggatggcgtatggaattaaagaaactatgcttgcaaagctctatattgaa
ctgcttaatttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacacct
acgggctcacgtggagatgctggagattttgcaatgattgcatactttgtgctaaaacct
aggagcccaaaacaaggcagactgacaatagagcaagtcaatgaacatttagatgcgata
tctaataataatgctgctaaaaacaagggccagttaaagaaaagtcttcttcacttaatt
agccagagcacagcactggaacaaaagtggcttatacgaatgattataaaggatctaaag
cttggtgttagtcagcaaactatattttccatttttcatcctgatgctgctgaattgcac
aatgttactactgatttggaaaaagtttgcagacagctgcatgatccctctgtctcactt
agtgatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgctattgcagat
atccagcaaattgagaaacaaatgggtaaccagacattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatggg
tttgactatacacagcagtttggtgcttcaccccttgaaggttcattaacaccatttatt
cataatgtatttaagggcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgacacacaaacttttatgcaaaaaggaaacaaatttgacataaaaagaatggtg
gaggactctgatcttcaaacctgcttctgtgtatttgatgtattgatggttaatgatcag
aagttggggcatgaagtactaagcaaaagatatgaaatcttaagtagtgtatttaaccca
ttaaagggcaggatacacattgtccataagagaagtgccagaacaagaaaagaagtaatt
gatgctttaaatgaggcaatagataacagagaggaaggaattatggtgaaagatcctatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
agtggactgatggatgaactggaccttttaattgttggtggttactgggggaaggggtct
cgtggtggaatgatgtctcattttctatgtgctgttgcagagatgccccctccaaatgaa
aaaccaaccattttccactccatttgtcgtgttggctctggctatactatgaaagagttg
tatgatctaggcttgaaactgtccaaacactggaagccctacaataggaaggacccgcct
ggtaacatcttgtgtggaactgaaaaaccggaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagctgagattgttgacagtgatatgtataaaactgactgtact
ttgagattcccccgaattgagaagataagagaagacaaagaatggtacgagtgtatgact
tcagacatgttagaagacctcagaagcaaagcacaaggaaagctggcctctaagcacctt
catatagatgagtatgatgagccacatgagaaaaaaaggaaaactgtttcaaaggtgagg
aagaaaattggaatagctgagcagtttaaagctcctgatctttctagtgtaagcaaggtt
tcaaatgtatttgaagatgttgagttttgtgttatgacaggaatgggaaaatactcgaag
tgtgagctggaaaacagaatagcccaatgtggtggcagtgtggcacagaacccggggccg
gagacttactgtgtcattgtaggagttgagaatgtcagagtaaaaaacatcattgcttcc
aacaaatatgatgtggtgagggcagagtggctccttcagtgttttcaaagcaaaatgctg
gtgccttggcaaccagcctttatgattcacatgtctcctgacacaaaagaacattttgct
cgtgagtatgattgttatggagacagttacacagcaaacacagatgttgcacagctcaag
gaagtgttctcaagaatgaaggacaataaggcaatgcctctggactcgattgcagagcta
gaagaacgttattgggggaacagttgtcagctcggtatattgagaggaagcaccatttat
gtggactgttacgctgttgttaatgagcccaaaagcaaaatccctggaactacactatca
gttagagctttggagctccgtttttatggtgcaaaagtagtttctcaccttgaagagggt
gtctcccatgttgttgtaggagaagattattcacgggtagaaaaaatgaaagcactcagg
agaacgtttagaaaaaaatttaaaattgtgtctgagctttgggtaacacactcggtggag
gaaggagttgcaaagaatgaaaatcagtacttagtttaa
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