Cinclus cinclus (white-throated dipper): 134041453
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Entry
134041453 CDS
T10813
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
134041453 (SMCHD1)
DNA repair and recombination proteins [BR:
ccic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
134041453 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134041453
NCBI-ProteinID:
XP_062344266
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Position
1:complement(103595962..103664508)
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AA seq
2031 aa
AA seq
DB search
MAAAAGGGRTPRRPALLTARGSGDRTVFLFDRRREQADLGEKVLSYGRDDYRAFRSAVCQ
AFDISSDETFVITTTNRKEITEDNFKDLVQDGVTLYVLQSVDQMLLLATKERIDFLPHYD
TLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSQNAGIRSIQIKLLFDDSQGKPAVAV
IDNGSGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQA
VFFVGQSARMISKPATSQDVHELVLSKEDFEKKEKNKEAIYTGFIQNRKPSDSTHITSDD
ERFLHNLILEERDKESFTAVVITGVQPDHMQYLKNNFHLWTRQLAHIYHYYIHGPKGNET
NAVTKEISPFNNIDIQISMFEKGKVPKMVNLREIKDDMQTLYINTAADSFEFKAHVEEEG
IVEGIIRYHPFLYDKETYPDDPCFPSRLNDDDDDDCFIVEKGARGKRPIFECFWNGRLIP
YTTVEDFDWCAPPKKRGLAPMECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLF
TRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGITVRPDIPSKRMQSPWTTYAA
IEWDGKTYKTGQLVKTLKTHPILYGSIEKFYLYGDHDGDIFATGGEVQIALEPQALYAET
KIIPISKLDRTVSDKVVKKYIEDEMARLPDKLSVTWPEGDELLPNETRFAGTPIGALRIE
ILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTENKEIISHISQHGGKWPYWFKKMEN
LQKLGNYSLKLQVVLNESNADTYAGRPLPSKVFKFTIVEGKPEKFLVGLLELPFRIGVPF
SIPLELQDEFGHTTHLTNRIRPILEASGLTLKHEDILVAAKCVIKGVTATGCVNSCQGKN
FNLKITLPGLKEDTQVIKIRLQPGPPHQLKVKPDSEILKIENGTAFPFQVEVVDESGNIT
AQPELIVHCKFLGSSDLPVYSVDCSNGGTNILTGPVIHVQNIKKDQILKARFEVLDCKDV
PPVEKIIKLLPSSHVARLQVLSMNGQKALQIKHQDEISCVAGQVMNKLIFQMYDEAEREI
PITAAAAEKIKVNWTPKIDRELLMQGLLPDVKVPTSVKDVRYCLITYLDEHVSLESAFTV
RPVPDEPKHIKCKLKGSNTLQLGEELQSEIDVMITDQFGNQVQTVTSACVNSLGVSGPGL
DKSNLKITWQESTQTMKVKGIRYKPCLLGNKELCFAWREFSDFIRVNLVAGSPAKLQFVD
WPELEKPVSVINGRELQRPLIVQLCDQWGNPTPEPNVKISLTKSNNLKLVPSNQQHKTDD
TGRANLGVFTIHAPRGEHILQLKASHNKTVLDCLVITLNVLPDPEKPVCLNVKYDKSPSF
PAGGTFPDFMVSVLSEDDTIMKNINPARISMKMWEAQSSRVRTLIDVTTFSCSKVKDDKE
DSFFYFRDKVVPERVGTYVIQFTFAMDKTNMLNSEQIIVEVVPNDPVRLLPDSLPATPAV
SNVRALTSRTLVKDLYLHLMDEYNNHTGFDLVGRIIAKIRSPNEEDIEIPQFHGKVDRVE
FPLENGSAEINLVLAEDSPGRDSTEYILVFEPHLPALKKPLEPYCLSFMFYNDFKRQQLM
TTLTREKDQLSKSIDLYRKMFDTTNQLVAEMKCQVKEAEAREAVLKNELKKHQIELPQKN
TLQYVDSLIKKKMLEQEGVMKQPRRTCTLPNYPKGNQDVLGKIAHLAQIEDNEAAKVISW
HLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLPDWSRPLPHLKNGRTFFRP
IGNPVFARDLLTFPDNIEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLTRE
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKLYSTFSGQIDLLQQYRAAVIKLDNVN
KDLDLHLQSLNTPEMQKKKQELAEQEKNLKIVKQKLGMTPALSDKGAESLLQPVMLDTSD
TPIPPKRMRRETVKKLYDSEEWISSPAKQQQQQVLQMAPSELNGTPRKRKA
NT seq
6096 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcggcgggaggcggccgcacacctcgtaggccggcgctgctgaccgctcgt
ggcagcggggaccgcaccgtgttcctcttcgaccggcgccgggagcaggcggacttgggc
gagaaagtgctcagctacggcagggacgactaccgcgctttccgcagcgccgtctgccag
gcatttgacatatcttctgatgaaacctttgttatcacaacaacaaataggaaggaaatt
acagaagataacttcaaggacctcgttcaggatggagttactttatatgtgctacagtca
gttgatcaaatgttgcttttggcaactaaggaacgaattgactttcttccccactatgat
acacttgtcaaaagtggcatgtacgagtactatgccagcgagggccaaaatcctttgcca
tttgcccttgctgaattgattgacaattctctgtcagctacatctcaaaatgctggtatt
cggagtatacagataaaattgttgtttgatgattcccaaggaaaacctgctgttgctgtg
attgataatggaagtggaatgacttctaaacagcttaacaattgggctgtgtatagattg
tcaaagtttacacgacaaggtgactttgaaagtgatcattcggggtacgtacgccctttg
ccagtgcctcgtagtttaaatagcgatatctcgtattttggagttggaggcaagcaagca
gtgttcttcgtgggacagtctgccagaatgataagcaaacctgcaacatctcaggatgtt
catgaacttgtcctttctaaagaggattttgaaaagaaggagaaaaacaaagaggcaata
tatactggattcattcaaaatagaaagccatctgattctactcatatcacaagtgatgat
gaaagatttcttcataatctaatattagaagaaagggataaagagagtttcacagcagtt
gtcattacaggtgtacaaccagatcacatgcagtacttgaaaaacaactttcatctttgg
acaaggcagctggcacatatatatcactattatattcatggaccaaaaggaaatgaaact
aatgctgtaacaaaagaaataagccctttcaacaacattgacattcagatttcaatgttt
gaaaagggaaaagtaccaaagatggtcaatctgagggagatcaaagatgacatgcagaca
ttatatataaatactgcagctgatagttttgaatttaaggcacatgttgaagaagaaggt
atagttgaaggcatcatccgataccatcccttcctttatgataaagaaacgtaccctgat
gatccatgttttccatcaagattaaatgatgatgatgatgacgactgcttcatagtagaa
aaaggagccagaggaaaaaggcctatttttgaatgtttttggaatggaagattaatacca
tacacgactgtggaagattttgattggtgcgctcctccaaagaagagaggattggcaccg
atggagtgctacaacagaatttctggtgcgttgtttaccaatgataagttccaggtcagc
acaaacaaactcacttttatggatctggagctgaagctgaaggataagaatactctgttc
acaagaatcttcaatggacaggagcagcgaatgaaaattgacagggaatttgctctgtgg
ctcaaagactgtcatgaaaaatatgacaaacagataaaattcacagtctttaaaggaata
actgtacgccctgatataccatccaaaagaatgcagagcccttggacaacgtatgctgca
atagagtgggatggaaaaacatacaaaactggacagctggtgaaaactcttaagactcat
ccaatactctatggaagcattgagaaattttacttgtatggagatcatgatggggatata
tttgccactgggggagaggtccagattgctttggaaccgcaggcattgtatgctgaaacg
aaaattattccaatctcaaaacttgacagaacagtgtctgacaaagttgttaaaaaatac
attgaggatgaaatggcaagacttcctgacaaattatcagtaacatggcctgaaggagat
gagttgttaccaaatgaaacaagatttgctggtacaccaataggagcattaagaatagaa
attctaaataaaaaaggagaagcaatgcaaaaacttccaggtacaagccacggaggttca
aagaaacttcttgttgaactcaaggttattttgcattcacctactgagaataaagaaata
atttcccatatcagtcagcatggaggcaagtggccatactggtttaaaaaaatggaaaat
cttcagaaacttggtaactactccttgaaactgcaagtagtattgaatgaaagtaatgca
gacacttatgcaggaaggcctctgccatctaaagtatttaaatttactattgtggagggc
aaaccagagaaatttttggtgggtctcttggagcttccgtttcgaattggagtacctttt
agtattcctttggaattgcaggatgaatttggtcatacaacccacttgacaaatcgcatt
agaccaattctggaagctagtggattaacattgaagcatgaagacatacttgtggcagca
aagtgtgtcattaagggtgttactgctacaggctgtgtaaatagttgccagggcaagaac
tttaatctgaagattactcttcctggtttgaaagaagatacacaagtcattaaaataaga
ttgcagcctggccctcctcatcaattgaaagtaaagccagattcggaaattctgaagatt
gaaaatggtacagcttttccctttcaggttgaagtagtggatgaatcaggaaatataaca
gcacagccagagttgattgttcattgtaagtttttaggttcttcagaccttcctgtgtat
tctgtggactgcagtaatggaggaacaaacattttaactggtccagttatacatgtacag
aatatcaagaaagaccagatactgaaagcaaggtttgaagtacttgattgcaaagatgtg
ccaccagtggaaaagattataaaacttcttcctagcagtcatgttgcaagactacaggtc
ttaagtatgaacggacaaaaggctcttcagattaaacatcaggatgaaatcagttgtgtt
gctggccaagtcatgaacaaacttatatttcagatgtatgatgaagcagaaagggaaata
cccataactgcagctgctgcagaaaaaatcaaggttaactggacacctaaaattgacaga
gagctgttgatgcagggattattacctgatgtaaaagtaccaacttcagtaaaagatgta
cgttactgtctaattacttaccttgatgagcacgtctctctggagagtgcattcacagtc
agaccagttcctgatgaacccaaacacattaaatgtaaactaaaaggctcaaacacactg
cagttgggtgaagaactgcagagtgaaatcgatgtaatgattacagatcagtttggaaat
caggttcagacagtgacatctgcatgtgtaaattccctaggagtttctgggcctggactt
gataaatcaaatctgaaaataacttggcaggaaagtactcaaacgatgaaagtaaaaggt
attcgatataaaccttgtttacttggaaacaaagaattgtgcttcgcatggcgtgaattt
tctgactttatcagagtgaatttagtagcaggatccccagctaaattgcagtttgtggat
tggccagagttagaaaagcctgtttcagtgattaatggtagagaattgcagaggcccctt
attgttcagttgtgtgatcagtggggaaatccaactcctgaacctaatgtcaaaatcagc
cttacaaagagtaacaacttaaagcttgttccttcaaaccagcaacataaaacagatgac
actggtagggctaacctgggagtttttactattcatgcacctaggggagagcacattttg
cagcttaaagcctcacacaacaagactgtattagattgtcttgtaattacactaaatgtc
ctccctgatcctgagaaacctgtctgcttgaatgttaaatatgacaaaagtccttctttt
ccagcaggaggtaccttccctgattttatggttagtgttctttctgaagatgacaccatt
atgaaaaatattaatccagctcggatttctatgaaaatgtgggaagcacagagcagtcgg
gttaggacactgattgatgttacaacgtttagctgtagtaaagtgaaggatgacaaggaa
gacagcttcttctacttcagggataaagtggttccggagagagtaggcacttacgttatc
cagtttacctttgcaatggataagacaaacatgctcaacagtgaacagattatagttgaa
gttgtacctaatgaccctgtacgcttgttacctgattctttaccagctactccagcagtt
tccaatgttcgagctcttaccagccgtacactggtcaaggatttatacctccatttaatg
gatgaatacaacaaccacactggatttgatctagttggcagaataatagcaaaaattaga
agccccaatgaagaagatatagagatcccgcagtttcatgggaaagttgatagagtagag
tttccattggagaatggatcagctgaaattaatttagtgctggctgaagacagtcctgga
agagatagcactgaatatattcttgtctttgagccacatctgccagctttgaaaaagcct
ttggaaccatattgtctctcatttatgttttacaacgatttcaagaggcagcagctgatg
acaacactgaccagggagaaagaccaattgtctaagtccatagatctttacagaaagatg
tttgatactaccaatcagctcgtagctgaaatgaaatgtcaggttaaagaagctgaagca
agagaagccgtcctgaagaatgaactgaaaaagcaccaaattgaattaccacagaagaac
acacttcagtatgtagattctcttattaaaaaaaagatgttggaacaagaaggagtaatg
aagcagccaaggagaacttgtaccctcccaaactatccaaaaggcaaccaggatgttcta
ggcaagattgcacatttagctcaaattgaggataatgaagctgcaaaagttatttcttgg
cacctggcaagtgacatggactgtgtagtcacattgaccacagaagctgctcgttctatc
ttcgatgaaactcaaggtcgacaacaagtgttaccccttgattccatttacaagaagaca
cttccagattggagcagacctttacctcacttgaaaaacggaagaaccttcttcagacct
attggaaatcctgtatttgccagagatctgttaacatttccagataacatagagcattgt
caaacagtgtttggtatgctcctgggtgatactatcattatagataacttggatgctgcc
aaccactacagaaaagaggttgtaaaaattacacactgccctaccttgctgactagggaa
ggagacaggattcggagcaatggaaaatttggaggcctgcagaataaagctcctccaatg
gacaaactcagaggaatggtatttggagcaccagtgccaaaactttactctactttctct
ggacagatagatcttcttcagcagtaccgtgcagcagtgattaaacttgacaatgtgaat
aaggacctcgatttacatttgcagtcactgaacactccagaaatgcaaaagaaaaaacag
gaacttgctgaacaagagaaaaacctcaagatagtaaaacaaaaattgggtatgactcct
gctttatcagataaaggtgctgaatcattacttcagcctgtcatgttagatacatctgac
acccccattcctcccaaaagaatgcgaagagagacagtgaaaaaactgtacgactcagaa
gaatggatctcctctcctgcaaaacagcagcaacagcaagtgctgcaaatggctccttca
gaacttaatggaactccacgaaaaagaaaggcatag
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