Cinclus cinclus (white-throated dipper): 134042574
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Entry
134042574 CDS
T10813
Symbol
GGPS1
Name
(RefSeq) geranylgeranyl pyrophosphate synthase isoform X1
KO
K00804
geranylgeranyl diphosphate synthase, type III [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic00900
Terpenoid backbone biosynthesis
ccic01100
Metabolic pathways
Module
ccic_M00367
C10-C20 isoprenoid biosynthesis, non-plant eukaryotes
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
134042574 (GGPS1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
ccic01006
]
134042574 (GGPS1)
Enzymes [BR:
ccic01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
134042574 (GGPS1)
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
134042574 (GGPS1)
2.5.1.29 geranylgeranyl diphosphate synthase
134042574 (GGPS1)
Prenyltransferases [BR:
ccic01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
134042574 (GGPS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
DUF7825
Motif
Other DBs
NCBI-GeneID:
134042574
NCBI-ProteinID:
XP_062346132
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All DBs
Position
3:complement(68774518..68796711)
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AA seq
310 aa
AA seq
DB search
MSVSYVLGNKEMDGMDETSKKILEPYQYLLQLPGKQVRTKLSQAFNHWLNVPEDKIQVII
EVTEMLHNASLLVDDIEDNSKLRRGFPVAHSIYGIPSVINCANYVYFLGLEKVLTLDHPD
AVKVFTSQLLELHKGQGLDIYWRDTYTCPTEAEYKAMVLQKTGGLFGLAVGLMQLFSNYK
KDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQV
QNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELESEAYKQIELLGGNPELVALVQQ
LSKMFKETEN
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgagctacgtcttaggaaataaagaaatggatgggatggacgaaacatctaaa
aaaatcctagagccataccagtatttacttcaactaccaggtaagcaagtgagaaccaaa
ctgtcacaggcctttaatcactggctgaatgttccggaagataaaatacaggttatcatt
gaagtgacagagatgttgcacaatgcaagcctacttgtggatgatattgaagataactca
aagctacgacggggctttccagtggcacacagtatctatggaattccatctgtaatcaac
tgtgctaattatgtttattttcttggcttagagaaggttttaacccttgatcatcctgat
gctgttaaagtttttaccagtcaacttctggaactccataaaggtcaaggcttggacatt
tactggagagatacttacacctgtcctacagaggctgagtataaagcaatggtactgcaa
aagacaggcggtctctttggattagctgtaggcctcatgcagctgttctcaaactataaa
aaagacttaaagccacttcttaacacacttggtctcttcttccaaattagagatgactac
gccaacttgcactccaaagaatatagtgagaacaagagtttttgtgaagacttaactgag
ggcaagttctcattcccaaccattcatgcaatttggtcaagacctgaaagtactcaggtg
cagaacattttacgtcaaaggacggagaacatagatataaaaaaatactgtgttcattac
cttgaagatgtcggttcctttgagtacactcggaatacattgaaagagcttgaatctgaa
gcctataaacaaattgaattgcttgggggaaaccctgagcttgtagcactagttcaacag
ctgagcaaaatgttcaaagaaactgaaaattaa
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