Cinclus cinclus (white-throated dipper): 134044843
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Entry
134044843 CDS
T10813
Symbol
KDM2A
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
134044843 (KDM2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccic03000
]
134044843 (KDM2A)
04121 Ubiquitin system [BR:
ccic04121
]
134044843 (KDM2A)
03036 Chromosome and associated proteins [BR:
ccic03036
]
134044843 (KDM2A)
Enzymes [BR:
ccic01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
134044843 (KDM2A)
Transcription factors [BR:
ccic03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
134044843 (KDM2A)
Ubiquitin system [BR:
ccic04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
134044843 (KDM2A)
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
134044843 (KDM2A)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
134044843 (KDM2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Cupin_8
Ribosomal_60s
LRR_4
Motif
Other DBs
NCBI-GeneID:
134044843
NCBI-ProteinID:
XP_062350263
LinkDB
All DBs
Position
6:9176502..9209871
Genome browser
AA seq
1207 aa
AA seq
DB search
MAAAAPVRGQRRRRDLEEEDDDSSPGVSFSLSSEESEMEPEEERIRYSQRLRGTMRRRYE
DDGISDDEIEGKRTFDLEEKLSTNKFNSTFVVFMEGKDFTVEYIQRGGLRDPLIFRSSDG
LGIKMPDPDFSVNDVRLCVGSRRIVDVMDVNTQRDIEMSMAQWARYYETPEEEREKLYNV
ISLEFSHTKLENLVQRPATVDLIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMS
VKGCYTDFHVDFGGTSVWYHIHRGGKIFWLIPPTPQNLELYENWLLSGKQGDIFLGDRVS
ECQRIELKQGYTFVIPSGWIHAVYTPMDTLVFGGNFLHSFNIPMQLRIYSIEDRTRVPNK
FRYPFYYEMCWYVLERYVYCITSRSHLTKDFQKESLSMDMELSSSDSVNMEEEEEEEDDE
DGAGKESRRPVTRRSILTSPIANGANVDYDELGKSCRSSLPGLKKTPSLDSSDSSRGSQN
GQAWDPSGGSPHKSRKVHLTQFELEGLRCLVDKLESLPLHKKCVPTGIEDEDALIADVKL
LLEEYANSDPKLALTGVPIVQWPKRDKLKLQARLRVRLPTIPITKPHTMKPAPRPTPVRS
TVSPIVSGARRRRVRCRKCKACMQGECGMCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLP
HSVTCALCGEVDQNEDSQDFEKKLMECCICNEIVHPGCLQMDGEGLLNDELPNCWECPKC
YQGDDTEKGQKRKVEESDDDTAQAKVLRPLRSCEEPLTPPPNSPTPMLQLIHDPASPRGV
VTRSSPGAGPSDHHSASRDERFKRRQLLRLQATERTMVREKENNPSGKKELSEVEKAKLH
GSYLTVTLQRPTKDVHGTSIVPKLQAITASSANLQHSPRVVVRHAPARMPLRSGGDEEAA
AEEEEEEEEEEEENAEEGGAARLNGRGGRVQEGEESCVQREVWMSVFRYLTRRELCECMR
VCKTWYKWCCDKRLWTKIDLSRCKSITPQALSGIIKRQPVSLDLSWTNISKKQLTWLVNR
LPGLKDLILAGCSWSAVCALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPTDKPSQDNR
SKLRNMIDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCNHLTDQSANLLTAVGSSTRNS
LTELNMAGCNKLTDQALLYLRRISNVTLIDLRGCKQITRKACEHFISDLSINSLYCLSDE
KLIQKIS
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggctcctgtaagaggacaaaggcgcaggagagacctggaggaagaggat
gacgacagcagtcctggtgtgtccttctcactctcttccgaggagtcggagatggagccc
gaggaagaacggatccgttacagccaaagactgcgtggcacgatgaggcggcgttacgag
gacgatggcatctccgacgatgagattgaagggaagaggacgttcgacctcgaggaaaag
ctgtccaccaacaagttcaactctaccttcgtggtcttcatggaaggcaaagacttcaca
gttgagtacatccagcggggtggcctgagggacccactcatcttcaggagctcagacggc
ctggggataaagatgccggatccggacttcagcgtgaacgatgtgcggctgtgtgtgggg
agccgacggatagtggacgtgatggatgtgaacacgcagcgggacatcgagatgtccatg
gcgcagtgggcgcgctactatgaaacaccggaggaggagcgggagaaactctacaatgtc
atcagcctggagttcagccacaccaaactggagaacctggtgcagagacctgctacggtg
gatttgattgactgggttgataacatgtggcccaggcacctgaaggaaagtcagacagag
tctaccaatgccattctggagatgcagtatccgaaggtgcagaaatactgtttgatgagt
gtcaagggctgctacacagatttccacgtggacttcggtggcacttctgtgtggtaccac
atccaccgagggggaaagatcttctggctgatccctcccacaccccagaacctggagctc
tatgaaaactggcttctctcagggaagcaaggagacattttccttggggacagagtgtca
gagtgccaacgcatcgagctcaagcagggctacacatttgtcatcccctcaggttggatc
catgctgtgtacactcccatggacacgctggtttttgggggcaacttcttacacagtttc
aacatccctatgcagctgcggatctacagcatcgaggaccgcacacgggtcccaaataaa
tttcgttatcccttctattacgagatgtgttggtacgtgctggagcgctatgtgtactgc
atcaccagccgctcccacctgaccaaggacttccagaaggaatctctcagcatggatatg
gagctgagctcctcggactcagtgaacatggaagaggaggaggaggaggaggatgatgag
gacggagcagggaaggaatcccggcgccctgtgaccaggaggtccattctcaccagcccc
atcgccaacggtgccaacgtggactatgacgaactgggcaagagctgccggagcagcctg
ccgggtctcaagaagaccccatccctagactcttccgactccagccggggctcccaaaac
ggccaggcctgggacccgagcgggggcagtccccacaagagcaggaaggtgcacctgacc
cagtttgagctggaggggctgcgctgcctcgtggacaagctggagtcgctccctctgcac
aagaagtgtgttcccaccggcatcgaggacgaggacgccctcatcgctgacgtcaagctg
ctgttggaagaatacgcgaacagcgaccccaaactggcacttacaggcgtccccatcgtc
cagtggcccaagagggataagctcaagctccaggcccggctgcgggtgcgcctgcccacc
atccccatcaccaagccacacaccatgaagccagccccccgcccgactcccgtcaggtcc
acggtgtctcccatcgtgtcgggtgcccggcggcggcgggtgcggtgccggaaatgcaag
gcctgcatgcagggcgagtgtggcatgtgccattactgcagggacatgaagaagtttggt
gggcctggccgcatgaagcagtcctgtgtcctccggcagtgcttggcgcccaggctgcct
cactcggtcacgtgtgcactttgcggggaggttgatcagaacgaggactcgcaggacttt
gagaagaagcttatggagtgctgtatctgcaacgagattgttcaccctggctgtctgcag
atggatggggaagggctgctcaacgatgagctccccaactgctgggagtgtcccaaatgc
taccagggtgacgacacagagaagggccagaagcggaaggtggaggagagcgacgacgac
acggcgcaagccaaggtgctgcggcccctgcggagctgcgaggagcccctgaccccccca
cctaactcgcccaccccaatgctgcagctgatccacgaccccgcgtccccccgtggggtg
gtgacacgctcgtccccaggggccgggcccagcgaccatcacagcgccagccgggacgag
cgcttcaagcgccggcagctgctgcggctccaggccaccgaaagaaccatggtgcgggag
aaggagaacaaccccagcggcaagaaggagctgtcagaggtggagaaggccaagctgcac
ggctcctacctcaccgtgacgctccagcgccccaccaaagatgtccacggcacttcgatc
gtccccaagctccaagccatcacagcctcctcggccaacctgcagcattcgccgcgcgtg
gtcgtgcgccacgcgcctgccaggatgcccctgcggagcgggggcgacgaggaggcggcc
gccgaggaagaggaggaggaagaggaggaggaggaggagaacgcggaggaggggggagca
gcccggctgaacgggcgcgggggccgggtgcaggagggcgaggagagctgcgtccagcgc
gaggtctggatgtccgtgttccgctacctcacccgcagggagctctgcgagtgcatgcgg
gtgtgcaaaacctggtacaagtggtgctgtgacaagagattgtggacaaagatagacttg
agcaggtgcaagtccatcaccccccaggcactgagtggcatcatcaaaaggcagccggtc
agcctcgacctcagctggaccaatatctcaaaaaaacagcttacgtggctcgtcaacagg
ctgccgggcctgaaagacctcatcctagcaggctgttcctggtccgcggtctgtgctctc
agtacctccagctgcccccttctcaggaccctcgatcttcggtgggcagtaggaatcaag
gaccctcagatccgggacttactcacacctccaacagacaaacccagtcaggacaatcgc
agcaaactccgcaacatgatcgacttccggctcgccgggctggacatcacggacgccacg
ctgcgcctgatcatccgccatatgcccctgctctcccgcctcgacctcagccactgcaac
cacctcacggaccagtcggccaacctgctcaccgccgtgggctcctccacacgcaactcc
ctcaccgagctcaacatggcaggctgcaataagctgacggaccaggccttgctgtacctg
cgccgcatctccaacgtcaccctcatcgacctgcggggttgcaaacagatcacccgcaaa
gcctgtgagcacttcatctcggacctgtccatcaacagcctctactgcctgtccgacgag
aagctgatccaaaaaatcagctag
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