Cinclus cinclus (white-throated dipper): 134045554
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Entry
134045554 CDS
T10813
Symbol
THBS1
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04115
p53 signaling pathway
ccic04145
Phagosome
ccic04148
Efferocytosis
ccic04350
TGF-beta signaling pathway
ccic04510
Focal adhesion
ccic04512
ECM-receptor interaction
ccic04820
Cytoskeleton in muscle cells
Brite
Membrane trafficking [BR:
ccic04131
]
Endocytosis
Phagocytosis
Opsonins
134045554 (THBS1)
Glycosaminoglycan binding proteins [BR:
ccic00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134045554 (THBS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134045554
NCBI-ProteinID:
XP_062351360
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Position
6:complement(30846035..30859327)
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AA seq
1177 aa
AA seq
DB search
MGPATALCLLLLVLGGSETKRTAESRNDDNSVFDLFELTGFMRKGAGRRGPGVYLVKGPE
SSSPAYRIEDASRIPAVPDSKFQDLLDAIHAEKGFILLATLRQAKKSRGTLLSVEQKDGS
GHVFSLVSNGKAGSLDLSLSVDGKQQLVSVEDVLLATGHWKNITLFVQEDRAQLYVGCEK
MENAELDIPIQNIFTRDLASSARLRIAKGGVNDNFQGLLQNVRFVFGTTLETILRNKGCS
SSTSAIITLDNPINGSSPAIRTNYIGHKTKDIQAVCGFSCDELTNMFVELQGLRSMVTTL
QDRVRKVTEENEIIAKVVQITPGACIHNGVLHKNKEEWTIDSCTECTCQNSATICRKVSC
PLMPCSNATVPDGECCPRCWPSDYADDGWSPWSEWTSCSVTCGNGIQQRGRSCDSLNNRC
EGSSVQTRTCHLQECDKRFKQDGGWSHWSPWSSCSVTCGTGIITRIRLCNSPVPQLNGKP
CEGEARENKPCQKDPCPINGNWGPWSPWDACTVTCGGGLQKRSRLCNNPEPQYGGKTCVG
EARGTQVCNKQDCPIDGCLSNPCFAGATCTSAPDGSWKCGACPAGYHGDGIHCQDIDECK
EVPDACFIFNGVHRCENTEPGYNCLPCPPRFTGTQPFGHSVEDAMTNKQVCKPRNPCTDG
THDCNKNAKCNYLGHFSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHC
KKDNCPNLPNSGQEDYDKDGIGDACDNDDDDDGIPDDRDNCPFIYNPQQYDYDRDDVGDR
CDNCPYNHNPDQSDTDNNGEGDACAIDIDGDGVLNERDNCQYVYNVDQRDTDLDGVGDQC
DNCPLEHNPDQEDTDSDLIGDQCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDA
CDHDDDNDGIPDDKDNCRLVANPDQADSDGDGRGDACKDDFDQDNVPDIDDICPENVDIS
ETDFRKFQMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNAVDFSGTFF
INTERDDDYAGFVFGYQSSSRFYVVMWKQITQSYWDSTPTKAQGYSGLSIKVVNSTTGPG
EHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVMYEGKKIMA
DSGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggggccagcgactgctctctgcctccttcttctcgtgctcggcggctcggagaccaag
cgcactgcagagtccaggaatgatgataacagtgtcttcgatctctttgaactcactggc
ttcatgcggaagggagccgggcgccggggccccggggtgtacctggtgaagggtccggaa
tcctccagccctgcttaccgcattgaagatgccagtcgcatccccgctgtccctgactcg
aagttccaagacttattagacgccatccatgctgagaagggcttcattctcctggccact
ctccggcaagccaagaaaagcagaggcacactgctgtccgtggaacagaaagatggctct
ggtcatgtcttcagtctagtatcaaatggcaaggcaggctccctggacctgagcctttct
gttgatggcaagcagcagttagtgtcggtagaggatgtcttgctagctacaggacattgg
aagaatatcaccctgtttgtgcaggaggaccgagctcagctctatgtggggtgtgagaaa
atggagaatgctgaactggacatccccatccagaacatcttcactagggacctggctagc
agtgccaggctccgtattgccaaagggggagtcaatgacaacttccagggtctgctgcag
aatgtgcggtttgtgtttggaacaactctggaaaccatcctgcggaacaaaggctgctcc
agctccactagtgcaatcattactttggacaaccccatcaatggttccagcccagctatc
cgcactaattacattggccataaaacaaaggacatccaagcagtctgtggattttcctgt
gatgaacttactaatatgtttgtggaactgcaagggctacggtccatggttacaacactt
caagacagagttcgcaaagtgactgaagaaaatgaaatcattgccaaagtagtccagatc
actcctggagcatgcattcataatggagtcctgcacaaaaataaagaggagtggactatt
gacagctgcacggaatgtacttgccagaactctgctactatatgccggaaagtgtcctgt
cctctcatgccttgttccaatgccaccgtgcctgatggggagtgctgccctcggtgctgg
cctagcgactatgcagatgatggatggtctccttggtctgaatggacctcatgttctgtg
acctgtggtaatgggattcagcagagaggccgttcctgtgacagcctcaataaccgctgc
gaaggctcctctgtacagactcggacttgccaccttcaggagtgcgacaagcgatttaaa
caggatggtggctggagtcactggtcaccgtggtcatcatgttctgtcacctgtggcacg
ggcatcatcactagaatccgtctttgcaactctccagtaccacagctgaatggcaaacct
tgtgagggtgaagcaagagaaaacaaaccctgccagaaagatccttgcccaattaatggc
aactggggaccatggtctccatgggatgcttgcacagtgacgtgtggaggaggacttcag
aaacgaagccgtctctgcaataatcctgagcctcagtatggtgggaagacttgtgtaggt
gaagctagagggactcaggtctgcaacaaacaggactgtccaattgatgggtgtctgtct
aatccctgctttgcgggggctacgtgcaccagcgcccctgatggttcctggaagtgtggt
gcctgtcctgctggctaccatggtgatggtattcactgccaagatattgatgagtgcaaa
gaggttcctgatgcctgctttatattcaatggagtgcacaggtgtgagaatactgaacct
ggctacaactgtctgccttgtccaccacgtttcactggaacacagccatttggccacagt
gttgaggatgccatgactaacaaacaggtctgcaagccccgtaatccatgcacagatgga
acacacgactgcaacaagaatgccaaatgcaattaccttggccacttcagtgaccccatg
tatcgctgtgaatgtaaaccaggctatgctggcaatggcatcatctgtggagaagatact
gacttggatggatggccaaatgagaacctggtttgtgttgccaatgctacttaccactgt
aaaaaggacaactgccctaatctgcctaactcagggcaggaagactatgataaggatggg
attggtgatgcctgtgacaatgatgatgatgatgatggcattcctgatgaccgggacaac
tgtccattcatctacaacccacagcagtatgactatgacagggatgatgttggtgaccgc
tgtgacaattgtccctacaatcacaaccctgatcaaagtgacactgacaacaatggagaa
ggagatgcatgtgcaatagatattgatggagatggggtgcttaatgaaagggacaactgc
cagtatgtctacaatgtagaccagagagatacagacttggatggtgttggagatcagtgt
gataactgtccactggaacacaaccctgaccaggaagacaccgattcagatctcataggt
gatcagtgtgacaacaaccaggacatagatgaagatggccatcaaaataaccttgataac
tgcccctatgtgcccaatgccaatcaagctgaccatgacaaggatggaaaaggtgatgcc
tgtgaccacgatgatgacaatgatggtatccctgatgacaaagataactgcagattggtt
gccaacccagatcaagctgattctgatggtgatggacgtggagatgcttgcaaagatgac
tttgaccaagacaatgtgccagacattgatgatatctgccctgaaaatgtggacattagt
gagactgatttccgaaaatttcagatgattcccttggatcccaaaggaacatcccaaaac
gatccaaactgggttgttcgtcaccagggtaaagaactggttcagacagtcaactgtgac
cctggccttgcagtcggttttgatgaattcaatgctgtggacttcagtggtaccttcttt
atcaatacagaaagggacgatgattatgctggctttgtatttggctaccaatctagcagt
cgtttctatgttgtcatgtggaagcagatcacccagtcttactgggactccacaccaact
aaagctcaaggctattcaggtctctccatcaaagttgtgaattctaccaccggtccagga
gaacaccttcgtaatgctctgtggcacacaggaaacactcctggccaggtgagaactttg
tggcatgatcctcgtcacataggctggaaagacttcactgcatacagatggcgacttagc
catagaccaaagaccggctacatcagggttgtaatgtatgaagggaagaaaatcatggca
gactcaggaccaatctatgacaaaacctatgctggtggtcggctaggattatttgtcttc
tctcaagaaatggtgttcttctcagaccttaaatatgaatgcagagattcataa
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