Cinclus cinclus (white-throated dipper): 134052071
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Entry
134052071 CDS
T10813
Symbol
RFNG
Name
(RefSeq) beta-1,3-N-acetylglucosaminyltransferase radical fringe
KO
K05948
fringe [EC:
2.4.1.222
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic00514
Other types of O-glycan biosynthesis
ccic04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
134052071 (RFNG)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
134052071 (RFNG)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
ccic01003
]
134052071 (RFNG)
Enzymes [BR:
ccic01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.222 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
134052071 (RFNG)
Glycosyltransferases [BR:
ccic01003
]
Glycan extension
O-Glycan
134052071 (RFNG)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fringe
Galactosyl_T
Motif
Other DBs
NCBI-GeneID:
134052071
NCBI-ProteinID:
XP_062362264
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Position
20:complement(12500980..12508903)
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AA seq
368 aa
AA seq
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MSGPCLGLRRAGVLLSLGAAALLLLLLPRGQRPAVPRPPPAAGPSAAPPHRAGPEGSAGA
PGGGAGAGGLGGGLEGSPQLARRGRLRAAGSSARESLELKDIFIAVKTTRKYHKSRLDLL
LQTWISQARGQTFIFTDWEDRELRLKAGDHVINTNCSAVHTRQALCCKMSVEYDKFLESG
QKWFCHVDDDNYVNPRTLLHLLSAFSHSQDVYVGRPSLDHPIEAADHVQSDGSKTTVKFW
FATGGAGFCISRGLALKMSPWASLGNFISTAERVRLPDDCTIGYIIEGLLEVKLLHSPLF
HSHLENLQRLQGESVLQQVTLSYGDPENKHNVVSVGGVFGLQQDPTRFKSVHCLLYPDTI
WCPAKKMS
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgagcggtccttgcctggggctgcgcagggccggggtcctgctgtccttgggcgccgcc
gccctcttgctgttgctgctgccgcgggggcagcgccccgccgtgccccgtccgccgccc
gccgccgggcccagtgctgccccgccgcatcgcgcgggccccgaaggctctgccggagcg
ccgggcggcggggccggggccggcggccttggaggaggcctcgagggtagcccgcagctt
gcgcggaggggccgcctccgggctgccggcagctcggccagggagagcctagagctgaag
gacatctttattgcggtgaagaccacgaggaaataccataagagccggctggacttgctc
ctccaaacctggatctcccaggcgaggggacagacatttatattcacggactgggaggat
cgggagctacgcctgaaagcaggggatcatgtgatcaacaccaactgttctgctgtccat
acccggcaagctctctgctgcaagatgtctgtggaatatgataaattcctggaatctggg
caaaaatggttttgccacgtggacgatgacaactatgtgaaccctcggactctcctacat
ctcttgtctgcattctcacacagccaggatgtctatgtggggcgaccgagtctggaccat
cccatcgaagcagctgaccatgtccaaagtgatggatcaaagacaactgtgaaattctgg
tttgccaccggtggagctgggttctgtatcagccgaggtcttgccctgaagatgagtccc
tgggctagcctgggcaatttcattagtactgcagaaagagtgcgtcttcctgacgactgc
actattggctacatcatcgaagggctgctggaggtaaagctgctacacagcccgttgttc
cattcccacctggaaaatctgcagagactgcaaggcgagtctgtgctgcagcaggtaacc
ctgagttacggtgaccctgagaacaaacacaatgttgtgagtgtgggaggagtgtttggc
cttcagcaagatccaacccgatttaaatctgtccattgtctgctttatcctgacactatt
tggtgccctgctaagaagatgtcataa
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