Cinclus cinclus (white-throated dipper): 134053115
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Entry
134053115 CDS
T10813
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134053115 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccic03041
]
134053115 (EFTUD2)
Spliceosome [BR:
ccic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134053115 (EFTUD2)
Complex C
U5 SnRNP specific factors
134053115 (EFTUD2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
Motif
Other DBs
NCBI-GeneID:
134053115
NCBI-ProteinID:
XP_062363936
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All DBs
Position
24:1707937..1729070
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDELGRESKDLDELEDDDDDDDMGEHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgatctgtacgacgagtttgggaactacatcgggcctgagttggactcggac
gatgacgacgacgagctgggccgagagtccaaagacctggacgagctggaggatgatgat
gatgatgatgacatgggggagcacgatgaggatcaccccgggatggaggtggtgctgcac
gaggacaagaaatactaccccacagcagaggaggtctatgggcctgaggtggagaccatc
gtgcaggaggaggacacacagccactcactgagcccattattaaacctgtgaaaaccaag
aagttctccctgatggagcagacactgccagtcactgtctacgagatggatttcctggca
gatctgatggacaactcggagctgatccggaatgtgactctgtgtgggcacctgcaccat
ggcaagacgtgttttgttgactgcctgatagaacagacacacccagaaatccggaagcgc
tacgatcaggatctctgctacacagatatattgttcacagagcaggagaggggggtgggg
atcaagagcaccccagtgacgattgttctgccggacaccaaaggaaaatctttcctcttc
aacatcattgacaccccaggtcatgtgaatttttctgacgaggtgacagccggccttcgc
atctcggatggcgtcgtgctcttcatcgacgcggccgagggggtcatgctgaacacagag
aggctgatcaagcacgcggtgcaggagaggctggcagtgactgtgtgcatcaacaagatc
gacagactcatcctggagctgaaactgcccccaacagatgcctattacaaactcagacac
atcgtagatgaagttaatggtctgatcagcatgtattccaccgacgagaacctcgtgctg
tctccccttctggggaacgtgtgcttctccagctctcagtacagcatctgcttcacactg
gggtcttttgcaaagatttatgcagacacatatggagacataaattaccaggaatttgcg
aagcgactttggggtgacatctacttcaatccgaagacccgcaagttcaccaagaaggcc
ccgacaagcagctcccagcgcagcttcgtggagttcattctggagcccctgtacaagatc
ttggctcaggtggtgggggatgtggacacgaccctgcccaggactctggatgaacttggc
atccacctgaccaaagaggaattgaaactgaacatccggcccctcctgcggctcgtctgc
aagaagttctttggggagttcacaggctttgtggacatgtgtgtgcagcacattccctcc
ccgaaagtgggggccaagacaaaaattgagcacacctacactggcggcgtcgactctgac
ctgggggaggccatgagcgagtgcgaccctgacggtcccttgatgtgtcacacaaccaaa
atgtacagcactgatgatggtgtccagttccacgcctttggcagggtgctcagtggcacc
atccatgctgggcagcccgtgaaggtccttggggagaactacaccctggaagatgaggag
gattcccagatctgcaccgttggacgcctctggatctcagttgcaaggtatcacattgag
gtgaacagggttcctgctggcaactgggtgctgatcgagggcgtggaccagcccatagtg
aagacagcgactgtgacagagcctcggggcaatgaggaggctcagatcttccgtcccttg
aagttcaacaccacgtctgttatcaaaatagctgtggagccagtcaacccctcagagctc
cccaaaatgttggatggtctccgcaaagtcaacaagagctacccctcacttacaactaag
gtggaagagtctggggagcacgtgatcctgggaacaggagagctgtacctggactgtgtg
atgcacgatctgcggaagatgtattccgagattgacatcaaggtggctgatccagtggtg
acattctgtgagacagttgtggaaacatcctccctgaagtgctttgctgagacacccaac
aagaagaacaagatcacaatgattgctgagcccctggagaagggtctggcagaggacatt
gaaaacgaagtggtgcagataacatggaacagaaagaagctgggtgaattcttccagacc
aaatatgactgggatttgctggctgcccgttccatctgggcctttgggccagatgccact
ggcccaaacatcctggtagatgacacactgccctctgaggtggacaagtctctgctgggc
tcagtgaaagacagtatcgtgcagggcttccagtgggggaccagggaagggcccctctgt
gatgaattgatccgcaatgtgaagttcaagatcctggatgcggtgattgctcaggagccc
ttgcaccggggtggagggcagatcatccccacagcccgcagggtcgtgtactctgccttc
ctcatggccacccctcgcctgatggagccctactacttcgtggaggtccaggctcctgcc
gactgcgtgtctgccgtgtacacagtgctggcccggcgcagaggccacgtgacacaggat
gctccaatcccaggctctcccctctacaccatcaaagccttcatcccagccattgattcc
tttgggtttgagacagacttgaggacccacacgcagggacaagccttctcactctctgtc
ttccaccactggcagattgtgcctggtgaccccttggacaagagcatcgtcatccggccg
ctggagccacagccagccccacacctggccagggagttcatgataaagaccaggcgtagg
aagggcctgagtgaggatgtgagtatcagcaagttcttcgacgaccccatgttgctggaa
ctggccaagcaagacgtcgttctcaactaccccatgtga
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