Cinclus cinclus (white-throated dipper): 134053416
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Entry
134053416 CDS
T10813
Symbol
SCN4A
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
Ion channels [BR:
ccic04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
134053416 (SCN4A)
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GFIT
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NCBI-GeneID:
134053416
NCBI-ProteinID:
XP_062364422
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Position
24:903251..933223
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AA seq
1803 aa
AA seq
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MASLSHIPGPENLRPFTPASLAAIEQHMAEAEALRIKRQHVEMPEEEEVKPSSDLEAGKS
LPLIYGDPPLELIXIPLEDLDPFYKDKKHPNLALGQVDKTLDLGKCLLSDQPRFRYAFTG
IYTFESLIKILSRGFCIDDFTFLRDPWNWLDFMVISMAYITEFVDLGNISALRTFRVLRA
LKTITVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRWPPP
NSTFLEDLGLDNNTLVNSTFYDFMDDFTGNFTGNFTGNFTSNSTFDFEAYISDEANYYFL
EGALDALLCGNSSDAGKCPEGYECMKAGRNPNYGYTSYDTFSWAFLALFRLMTQDFWENL
FQLTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYAEQNDATMLEEQQKEEEFQQL
MEQLKKQQEEQERLLQERASSSDSLPSSVAGKGHDSDINSDQDKAKDCNGQVVPKITLQR
SDTVIDFNPTYELEKPDLNHLTVGNQDGPGLEKRVGSAISVISNAVEELEEAHQKCPPWW
YKFAHTFLVWNCCHPWMMLKEFVKLVVMDPFVDLGITICIVLNTLFMAMEHYPMTEEFEN
VLSVGNLVFTGIFTAEMVLKLIALDPYEYFQQGWNIFDSFIVTLSLVELGLANVQGLSVL
RSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYME
CVCKISVDCTLPRWHMHDFFHSFLIVFRILCGEWIETMWDCMEVAGQTLCLIVFMMVMVI
GNLVVLNLFLALLLSSFSADSLAASDDDGEMNNLQIAIGRISRGIAFAKASLLALLRRLC
KGKKVAPEEEQDPSKRDNSMLNHMDTALEPKSGYLDGTMDKEHIFMDELDHMNFINNPNL
TVQVPIASEESDLYEETSTQSDTEDTTNVRKNPLSSDNASSVCSTVDYKPPVPEEEEVAE
VAEESNEPEECFTEGCVKRFPCLYVDISSEKGKIWWNLRKTCFRIVEHDWFETFIVFMIL
LSSGALAFEDIYIEQRKVIRTILEYADKVFSYIFVIEMLLKWVAYGFKVYFTNAWCWLDF
LIVDVSLVSLTANWLGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMN
VLLVCLIFWLIFSIMGVNLFAGKYYRCVNTTTGELFDISMVNNKSDCMALLHTNEVRWVN
VKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSREIEEQPQYEINLYMYIYFVIFIIFG
AFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPANKF
QGKVFDFVTKQVFDITIMILICLNMVTMMVETDDQSELKTSVLYKINLVFIVIFTGECVL
KMFALRHYFFTVGWNIFDFVVVILSILGIVLSDIIEKYFVSPTLFRVIRLARIGRVLRLI
RGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFAYVKKESGIDDIFNFETF
GNSIICLFQITTSAGWDGLLNPILNSGPPDCDPELENPGSSVKGDCGNPAIGIFFFCSYI
IISFLIVVNMYIAIILENFSVATEESSEPLCEDDFEMFYETWEKFDPDATQFIAYSTLSD
FVDTLQEPLRVPKPNKIKLITMDLPMVAGDKIHCLDILFALTKEVLGDSGEMDALKATME
EKFMAANPSKVSYEPITTTLKRKHEEVCATKIQRAFRRYLLRRSVKQASYMYRHSQDALG
KDAPEKEGLIATKMQEIYGNTGTDVKTAPALGLERIPGLEMPQDAPEEAQAWDKECVVKE
SLV
NT seq
5412 nt
NT seq
+upstream
nt +downstream
nt
atggccagcctgtcgcacatcccgggccccgaaaacctgcgccccttcaccccggcttca
ctggctgccatcgagcagcacatggccgaggctgaggcgctccggataaagcggcagcac
gtggagatgcctgaggaagaggaggtcaagcccagcagtgacctcgaagccggaaagagc
ctgcccctcatctatggtgacccacccctggagctcatcnggatccccctggaagatctg
gaccctttctacaaggacaagaagcacccaaacttagctctgggacaagtggacaaaacc
ttggatctgggcaagtgtctcctgagtgaccagccccgtttcaggtatgccttcactggc
atctacaccttcgagtctctcatcaagatcctgtcgagaggcttctgcatcgatgacttc
acattcctgcgtgacccctggaactggctggacttcatggtcatctccatggcctacatc
accgagttcgtggacctggggaacatctccgctctcaggaccttccgtgtcctccgtgcc
ttgaaaaccatcacggtgataccagggctgaagacgattgtaggggctttaatccagtca
gtgaagaagctctcggatgtgatgatcctcacggttttctgcctgagtgtcttcgccctc
atcggcctccagctcttcatgggcaacctccggcagaagtgtgtgcggtggcctcccccc
aacagcaccttcctggaggatttggggctggacaacaacaccttggtcaactcaaccttc
tatgacttcatggatgacttcaccggcaacttcaccgggaacttcactgggaacttcacc
agcaacagcacctttgacttcgaggcctacatcagcgatgaagccaattactacttcctg
gagggagcccttgatgccctgctctgtgggaacagcagcgatgctgggaagtgccctgaa
ggctatgagtgcatgaaggccgggaggaaccccaactatggctacaccagctacgacacc
ttcagctgggccttcctggccctcttccgcctcatgacccaggacttctgggagaacctc
ttccagctgacactgcgggcagcagggaaaacctacatgatcttcttcgtggtggtgata
ttcctgggctccttctacctcatcaacctcatcctggccgtagtggccatggcttacgct
gagcagaacgacgccaccatgctggaggagcagcagaaggaggaggaattccagcagctc
atggagcagctgaagaagcagcaagaggagcaggaaaggctgttgcaggagcgcgcatcc
agcagcgattccctgcccagcagcgtggccgggaagggacacgactcggacatcaacagt
gaccaggacaaggccaaggactgcaacgggcaggtggtgcccaagatcaccctgcagaga
tctgacaccgtgattgatttcaatcccacctatgagctggagaagccagacctcaaccac
ctcactgtgggcaaccaagatgggccagggctggagaagagggtgggaagtgccatcagt
gtcatctccaatgcagtggaagagctggaagaagctcaccagaaatgcccaccctggtgg
tacaaattcgcccacacattcctggtctggaattgctgccatccgtggatgatgctgaag
gagtttgtcaagttggtggtgatggaccccttcgtggacctgggcatcaccatctgcatc
gtgctcaacaccctcttcatggctatggagcactaccccatgacggaggagttcgagaat
gtgctgagcgtggggaacctggtcttcacagggatcttcacggcagagatggtcctgaag
ctcattgctctggatccctatgagtatttccagcagggctggaacatctttgacagcttc
atcgtcactctgagcctggtagagctgggcttggccaacgtgcaggggctctccgtgctc
cgctccttccgcctgctgagggttttcaagctggccaagtcctggcccaccctcaacatg
ctcatcaagatcatcggcaactctgtgggcgccctgggcaacctcacactggttctggct
atcattgtcttcatcttcgctgtggtggggatgcagctcttcggcaagagctacatggag
tgcgtgtgcaagatctccgtggactgcaccctgccccgctggcacatgcacgacttcttc
cactccttcctcatcgtcttccgcatcctctgtggggagtggattgagaccatgtgggac
tgcatggaggtggccggccagaccctgtgccttatagtcttcatgatggtcatggtcatc
gggaaccttgtggtgctaaacctgttcctggctctgctgctgagctccttcagcgctgac
agcctggcggcgtcggacgacgatggggagatgaacaacctgcagatcgccatcggccgc
atcagccgcggcatcgccttcgccaaggcctcgctcctcgcgctgctccgccgcctctgc
aagggcaagaaggtggcaccagaggaagagcaggaccccagtaaaagggacaactccatg
ctcaaccacatggacacggccctggagcccaagtcagggtacctagatggcaccatggac
aaggagcacattttcatggatgagctggaccacatgaattttatcaacaaccccaacctg
acggtgcaggtccccatcgcctctgaggagtctgacctctatgaggaaaccagcacccag
tctgacaccgaggacaccaccaatgtcaggaagaaccccctgtccagtgacaatgcctcg
tctgtgtgcagcacagtggattacaaacccccagtgcctgaggaggaggaggtggcagaa
gtggctgaggagagcaatgagcccgaggagtgtttcactgaaggctgtgtgaagaggttc
ccctgcctctacgtggacatcagcagtgagaagggaaagatttggtggaacctcaggaaa
acctgcttccgcatcgtggagcatgactggtttgagactttcattgtcttcatgatcctc
ctcagcagtggtgcactggctttcgaggacatctacattgagcagcgcaaggtgatccgc
accatcctggaatacgcagacaaggtcttctcctacatctttgtcatcgagatgctgctc
aagtgggtggcctatggcttcaaggtgtacttcaccaatgcctggtgctggctggatttc
ctcattgtagatgtgtccctggtgagcctgacagcaaactggctgggatactctgagctg
ggagccatcaaatccctgcggacactgagggctctgcgacctctgcgtgctctgtcccgg
tttgagggcatgagggtggtggtgaatgccctggtgggtgccatcccctccatcatgaac
gtcctgctggtctgcctcatcttctggctgatcttcagcatcatgggggtgaacctgttt
gcagggaagtactacaggtgtgtcaacaccaccactggcgagctcttcgacatcagcatg
gtcaacaacaagagtgactgcatggccctgctccacaccaatgaggtcagatgggtcaac
gtcaaggtcaacttcgacaacgtgggcttgggatacctgtccctgctgcaggtggcaacc
tttaaaggctggatggacatcatgtacgcagctgtggactcacgcgagattgaagagcag
ccacagtatgagatcaacctctacatgtacatctactttgtcatcttcatcatcttcggt
gccttcttcaccctgaacctcttcatcggtgtcatcatcgacaacttcaaccagcagaag
aaaaagtttggaggcaaagatatcttcatgacagaagagcagaagaaatactacaatgcc
atgaagaagctgggctccaagaaaccccagaagcccatccctaggccagcgaacaaattc
caaggaaaggtgtttgactttgttaccaagcaagtgtttgacatcaccatcatgatcctg
atttgcctgaacatggtgaccatgatggtggaaacagatgaccagagtgagctcaaaact
tctgtactctacaagataaacctggtcttcatcgtcatcttcactggggagtgcgtgctc
aagatgtttgccctgcgtcactacttcttcactgtgggctggaacatcttcgacttcgtg
gtggtcatcctctccatcctaggtatcgtcctctcagacatcatcgagaagtactttgtg
tcccccaccctcttcagggtcatccggctggcgaggatcggccgcgtgctccggctgatc
cgaggagctaaaggcatccggacactcctctttgccctcatgatgtccctgcctgccctg
ttcaacatcggcctcctgctcttcctcgttatgttcatctactccatcttcgggatgtcc
aattttgcctatgtcaagaaggagtcagggatcgatgacatcttcaactttgaaaccttt
gggaacagcatcatctgcctcttccagatcaccacatcagcaggctgggatgggctcctc
aaccccatcctcaacagcggccccccagactgcgaccccgagctggagaaccccgggagt
tcagtgaaaggagactgtgggaaccctgccattggcatcttcttcttctgcagctacatc
atcatctccttcctcatcgtggtgaatatgtatatcgccatcatcctggagaacttcagt
gtggccacagaggagagcagtgagcccctctgtgaagatgattttgaaatgttttatgaa
acttgggagaagtttgacccagatgccacccagttcattgcctacagcaccttgtctgac
tttgtggacaccttgcaggagccactcagagttcccaagcccaacaagatcaaactcatc
accatggatctaccaatggttgctggggacaaaatccactgcctagatatcctctttgcc
ctgactaaagaagtgctaggagactcaggagagatggatgccctgaaggccaccatggag
gagaagttcatggctgctaacccctcaaaagtttcctatgaacctatcaccaccaccctg
aagaggaaacatgaggaggtctgtgctaccaagatccagagggctttccggaggtacctg
ctgaggcgctcggtgaagcaggcatcctacatgtacaggcacagccaggatgccctggga
aaggatgcgcccgagaaggaagggctgatcgccaccaaaatgcaggagatctatgggaac
actgggacagatgtgaagacagcccctgccttgggccttgagcgcattcccggcttggaa
atgccccaggatgctcctgaggaagcacaggcttgggataaggaatgtgtggtgaaagag
tcactggtgtaa
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